Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CE141_RS09375 Genome accession   NZ_CP022164
Coordinates   1892716..1894140 (-) Length   474 a.a.
NCBI ID   WP_088845946.1    Uniprot ID   -
Organism   Escherichia coli strain M160133     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1887716..1899140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE141_RS09350 (CE141_09345) yeeZ 1887772..1888596 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CE141_RS09355 (CE141_09350) yeeY 1888642..1889571 (+) 930 WP_053270452.1 LysR substrate-binding domain-containing protein -
  CE141_RS28070 yoeI 1889785..1889847 (+) 63 WP_010723108.1 membrane protein YoeI -
  CE141_RS09360 (CE141_09355) plaP 1889837..1891195 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CE141_RS09365 (CE141_09360) tsuA 1891374..1892432 (+) 1059 WP_088845945.1 thiosulfate utilization transporter TsuA/YeeE -
  CE141_RS09370 (CE141_09365) tsuB 1892446..1892673 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CE141_RS09375 (CE141_09370) sbcB 1892716..1894140 (-) 1425 WP_088845946.1 exodeoxyribonuclease I Machinery gene
  CE141_RS09380 (CE141_09375) - 1894322..1895500 (+) 1179 WP_088845947.1 site-specific integrase -
  CE141_RS09385 (CE141_09380) - 1895481..1895672 (-) 192 WP_000132739.1 AlpA family transcriptional regulator -
  CE141_RS09390 (CE141_09385) - 1896012..1896179 (-) 168 WP_000545716.1 hypothetical protein -
  CE141_RS09395 (CE141_09390) - 1896338..1896616 (-) 279 WP_001388117.1 DUF4752 family protein -
  CE141_RS29095 - 1896616..1897101 (-) 486 WP_308216548.1 DUF551 domain-containing protein -
  CE141_RS28790 - 1897273..1897407 (-) 135 Protein_1753 hypothetical protein -
  CE141_RS09405 (CE141_09400) - 1897404..1897613 (-) 210 WP_000951706.1 hypothetical protein -
  CE141_RS09410 (CE141_09405) - 1897615..1897803 (-) 189 WP_000797279.1 hypothetical protein -
  CE141_RS09415 (CE141_09410) - 1897976..1898665 (-) 690 WP_088845949.1 ead/Ea22-like family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54381.63 Da        Isoelectric Point: 5.4720

>NTDB_id=199641 CE141_RS09375 WP_088845946.1 1892716..1894140(-) (sbcB) [Escherichia coli strain M160133]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=199641 CE141_RS09375 WP_088845946.1 1892716..1894140(-) (sbcB) [Escherichia coli strain M160133]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCACTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584