Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CE141_RS05985 Genome accession   NZ_CP022164
Coordinates   1167521..1168036 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain M160133     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162521..1173036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE141_RS05940 (CE141_05935) csrA 1163399..1163584 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CE141_RS05970 (CE141_05965) yqaB 1164751..1165317 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CE141_RS05975 (CE141_05970) yqaA 1165314..1165742 (+) 429 WP_001287454.1 YqaA family protein -
  CE141_RS05980 (CE141_05975) gshA 1165815..1167371 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CE141_RS05985 (CE141_05980) luxS 1167521..1168036 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  CE141_RS05990 (CE141_05985) emrB 1168100..1169638 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  CE141_RS05995 (CE141_05990) emrA 1169655..1170827 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CE141_RS06000 (CE141_05995) emrR 1170954..1171484 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CE141_RS06005 (CE141_06000) ygaH 1171575..1171910 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CE141_RS06010 (CE141_06005) ygaZ 1171900..1172637 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=199631 CE141_RS05985 WP_001130208.1 1167521..1168036(+) (luxS) [Escherichia coli strain M160133]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=199631 CE141_RS05985 WP_001130208.1 1167521..1168036(+) (luxS) [Escherichia coli strain M160133]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737