Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CE141_RS04450 Genome accession   NZ_CP022164
Coordinates   872174..872650 (-) Length   158 a.a.
NCBI ID   WP_001297237.1    Uniprot ID   -
Organism   Escherichia coli strain M160133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 867174..877650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE141_RS28010 (CE141_04405) - 868209..868373 (-) 165 Protein_818 IS110 family transposase -
  CE141_RS04415 (CE141_04410) - 868721..869563 (-) 843 WP_032152755.1 DUF4942 domain-containing protein -
  CE141_RS04420 (CE141_04415) - 869648..869845 (-) 198 WP_032152719.1 DUF957 domain-containing protein -
  CE141_RS04425 (CE141_04420) - 869857..870345 (-) 489 WP_001774608.1 DUF5983 family protein -
  CE141_RS04430 (CE141_04425) - 870342..870719 (-) 378 WP_001774607.1 TA system toxin CbtA family protein -
  CE141_RS04435 (CE141_04430) cbeA 870809..871177 (-) 369 WP_001774606.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CE141_RS04440 (CE141_04435) - 871227..871871 (-) 645 WP_001774605.1 hypothetical protein -
  CE141_RS04445 (CE141_04440) - 871890..872111 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  CE141_RS04450 (CE141_04445) radC 872174..872650 (-) 477 WP_001297237.1 RadC family protein Machinery gene
  CE141_RS04455 (CE141_04450) - 872666..873145 (-) 480 WP_032152717.1 antirestriction protein -
  CE141_RS04465 (CE141_04460) - 873484..874302 (-) 819 WP_016238867.1 DUF932 domain-containing protein -
  CE141_RS04475 (CE141_04470) - 874401..874634 (-) 234 WP_001278287.1 DUF905 family protein -
  CE141_RS04480 (CE141_04475) - 874640..875317 (-) 678 WP_088845918.1 hypothetical protein -
  CE141_RS04485 (CE141_04480) - 875465..876145 (-) 681 WP_032082725.1 YafY family protein -
  CE141_RS04490 (CE141_04485) - 876348..877232 (-) 885 WP_001116802.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17691.29 Da        Isoelectric Point: 7.2020

>NTDB_id=199625 CE141_RS04450 WP_001297237.1 872174..872650(-) (radC) [Escherichia coli strain M160133]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLTHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199625 CE141_RS04450 WP_001297237.1 872174..872650(-) (radC) [Escherichia coli strain M160133]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGACACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment