Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CES94_RS22360 Genome accession   NZ_CP022154
Coordinates   4236159..4236635 (-) Length   158 a.a.
NCBI ID   WP_001549015.1    Uniprot ID   -
Organism   Escherichia coli strain ABWA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4231159..4241635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS22330 (CES94_22330) proB 4232291..4233394 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  CES94_RS22335 (CES94_22335) proA 4233406..4234659 (+) 1254 WP_000893260.1 glutamate-5-semialdehyde dehydrogenase -
  CES94_RS22345 (CES94_22345) ykfI 4235231..4235572 (-) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  CES94_RS22350 (CES94_22350) yafW 4235593..4235910 (-) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  CES94_RS22355 (CES94_22355) ykfH 4235929..4236150 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  CES94_RS22360 (CES94_22360) radC 4236159..4236635 (-) 477 WP_001549015.1 RadC family protein Machinery gene
  CES94_RS22365 (CES94_22365) yafX 4236651..4237109 (-) 459 WP_000211838.1 antirestriction protein -
  CES94_RS22370 (CES94_22370) ykfF 4237207..4237446 (-) 240 WP_000194654.1 DUF905 family protein -
  CES94_RS22375 (CES94_22375) ykfB 4237523..4237990 (-) 468 WP_001385283.1 protein YkfB -
  CES94_RS22380 (CES94_22380) yafY 4238013..4238456 (-) 444 WP_000649865.1 YfjS/YafY family lipoprotein -
  CES94_RS22385 (CES94_22385) ypjK 4238456..4238692 (-) 237 WP_001144031.1 protein YpjK -
  CES94_RS22390 (CES94_22390) yfjR 4238733..4239434 (-) 702 WP_000189411.1 WYL domain-containing protein -
  CES94_RS22395 (CES94_22395) - 4239651..4240472 (-) 822 WP_000197388.1 DUF932 domain-containing protein -
  CES94_RS22400 (CES94_22400) - 4240564..4241427 (-) 864 WP_001065555.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18045.73 Da        Isoelectric Point: 7.6553

>NTDB_id=199588 CES94_RS22360 WP_001549015.1 4236159..4236635(-) (radC) [Escherichia coli strain ABWA45]
MKQLSFLPGEMTPQDRCLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199588 CES94_RS22360 WP_001549015.1 4236159..4236635(-) (radC) [Escherichia coli strain ABWA45]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGTGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38