Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CES94_RS21930 Genome accession   NZ_CP022154
Coordinates   4154663..4155142 (-) Length   159 a.a.
NCBI ID   WP_060659225.1    Uniprot ID   -
Organism   Escherichia coli strain ABWA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149663..4160142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS21885 (CES94_21885) rnhA 4150361..4150828 (-) 468 WP_000917883.1 ribonuclease HI -
  CES94_RS21890 (CES94_21890) dnaQ 4150893..4151624 (+) 732 WP_001300756.1 DNA polymerase III subunit epsilon -
  CES94_RS21900 (CES94_21900) - 4151955..4152806 (-) 852 WP_060659228.1 DUF4942 domain-containing protein -
  CES94_RS21905 (CES94_21905) - 4152887..4153090 (-) 204 WP_060615262.1 DUF957 domain-containing protein -
  CES94_RS21910 (CES94_21910) - 4153122..4153613 (-) 492 WP_060615263.1 DUF5983 family protein -
  CES94_RS21915 (CES94_21915) - 4153610..4153987 (-) 378 WP_060659227.1 TA system toxin CbtA family protein -
  CES94_RS21920 (CES94_21920) - 4154038..4154397 (-) 360 WP_060659226.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CES94_RS21925 (CES94_21925) - 4154421..4154642 (-) 222 WP_044068431.1 DUF987 domain-containing protein -
  CES94_RS21930 (CES94_21930) radC 4154663..4155142 (-) 480 WP_060659225.1 DNA repair protein RadC Machinery gene
  CES94_RS21935 (CES94_21935) - 4155154..4155624 (-) 471 WP_053271697.1 antirestriction protein -
  CES94_RS21945 (CES94_21945) - 4155892..4156710 (-) 819 WP_060659224.1 DUF932 domain-containing protein -
  CES94_RS21950 (CES94_21950) - 4156830..4157063 (-) 234 WP_001614358.1 DUF905 domain-containing protein -
  CES94_RS21955 (CES94_21955) - 4157140..4157589 (-) 450 WP_040220400.1 IrmA family protein -
  CES94_RS21960 (CES94_21960) - 4157586..4158038 (-) 453 WP_001020418.1 YfjS/YafY family lipoprotein -
  CES94_RS21965 (CES94_21965) - 4158074..4158709 (-) 636 WP_000772020.1 hypothetical protein -
  CES94_RS21970 (CES94_21970) - 4158706..4159419 (-) 714 WP_040207089.1 WYL domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17817.38 Da        Isoelectric Point: 6.9730

>NTDB_id=199586 CES94_RS21930 WP_060659225.1 4154663..4155142(-) (radC) [Escherichia coli strain ABWA45]
MEQQLPLFARELAPADLQTVRKALSLLKCQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=199586 CES94_RS21930 WP_060659225.1 4154663..4155142(-) (radC) [Escherichia coli strain ABWA45]
ATGGAGCAACAGTTACCGTTGTTTGCCCGTGAATTAGCCCCTGCCGACCTGCAGACAGTCAGGAAAGCCTTATCTCTGTT
GAAGTGCCAGCTACGTGAAACCGGGGCGTCATTTACTTCCAGCCATGCCGTCCGCGACTGGCTGCGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCCTGCTGGACCACCTGGTGGTCGGCGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377