Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CES94_RS17025 Genome accession   NZ_CP022154
Coordinates   3179016..3180443 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain ABWA45     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3174016..3185443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS16990 (CES94_16990) yeeW 3174200..3174394 (+) 195 WP_000988599.1 DUF5983 family protein -
  CES94_RS29365 - 3174440..3174520 (+) 81 Protein_3134 hypothetical protein -
  CES94_RS16995 (CES94_16995) - 3174809..3174955 (-) 147 Protein_3135 transposase domain-containing protein -
  CES94_RS17000 (CES94_17000) - 3175009..3175191 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CES94_RS17005 (CES94_17005) tmaR 3175292..3175621 (-) 330 WP_000450409.1 DUF496 family protein -
  CES94_RS17010 (CES94_17010) yeeA 3175793..3176851 (-) 1059 WP_001200905.1 FUSC family protein -
  CES94_RS17015 (CES94_17015) sbmC 3177049..3177522 (-) 474 WP_088765795.1 DNA gyrase inhibitor SbmC -
  CES94_RS17020 (CES94_17020) dacD 3177641..3178807 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CES94_RS17025 (CES94_17025) sbcB 3179016..3180443 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  CES94_RS17030 (CES94_17030) tsuB 3180486..3180713 (-) 228 WP_088765796.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CES94_RS17035 (CES94_17035) tsuA 3180727..3181785 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  CES94_RS17040 (CES94_17040) plaP 3181964..3183322 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CES94_RS29370 yoeI 3183312..3183374 (-) 63 WP_010723108.1 membrane protein YoeI -
  CES94_RS17045 (CES94_17045) yeeY 3183589..3184518 (-) 930 WP_061093170.1 LysR substrate-binding domain-containing protein -
  CES94_RS17050 (CES94_17050) yeeZ 3184564..3185388 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=199570 CES94_RS17025 WP_000980570.1 3179016..3180443(+) (sbcB) [Escherichia coli strain ABWA45]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=199570 CES94_RS17025 WP_000980570.1 3179016..3180443(+) (sbcB) [Escherichia coli strain ABWA45]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment