Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CES94_RS06340 Genome accession   NZ_CP022154
Coordinates   1209284..1209799 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ABWA45     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204284..1214799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS06295 (CES94_06295) csrA 1205004..1205189 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CES94_RS06325 (CES94_06325) yqaB 1206514..1207080 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CES94_RS06330 (CES94_06330) yqaA 1207077..1207505 (+) 429 WP_001287457.1 YqaA family protein -
  CES94_RS06335 (CES94_06335) gshA 1207578..1209134 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CES94_RS06340 (CES94_06340) luxS 1209284..1209799 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CES94_RS06345 (CES94_06345) emrB 1209863..1211401 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CES94_RS06350 (CES94_06350) emrA 1211418..1212590 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CES94_RS06355 (CES94_06355) emrR 1212717..1213247 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CES94_RS06360 (CES94_06360) ygaH 1213338..1213673 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CES94_RS06365 (CES94_06365) ygaZ 1213663..1214400 (-) 738 WP_001549575.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=199547 CES94_RS06340 WP_001130211.1 1209284..1209799(+) (luxS) [Escherichia coli strain ABWA45]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=199547 CES94_RS06340 WP_001130211.1 1209284..1209799(+) (luxS) [Escherichia coli strain ABWA45]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731