Detailed information NTG0199544

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CES94_RS06050
• Genome accession: NZ_CP022154
• Coordinates: 1154780..1155772 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ABWA45
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1149780..1160772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CES94_RS06020 (CES94_06020)	ispD	1149841..1150551 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CES94_RS06025 (CES94_06025)	ispF	1150551..1151030 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CES94_RS06030 (CES94_06030)	truD	1151027..1152076 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CES94_RS06035 (CES94_06035)	surE	1152057..1152818 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CES94_RS06040 (CES94_06040)	pcm	1152812..1153438 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CES94_RS06045 (CES94_06045)	nlpD	1153623..1154717 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CES94_RS06050 (CES94_06050)	rpoS	1154780..1155772 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CES94_RS06055 (CES94_06055)	ygbN	1155866..1157230 (-)	1365	WP_000104466.1	GntP family transporter	-
CES94_RS06060 (CES94_06060)	ygbM	1157319..1158095 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
CES94_RS06065 (CES94_06065)	ygbL	1158100..1158738 (-)	639	WP_001278994.1	aldolase	-
CES94_RS06070 (CES94_06070)	otnK	1158735..1159997 (-)	1263	Protein_1111	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=199544 CES94_RS06050 WP_000081550.1 1154780..1155772(+) (rpoS) [Escherichia coli strain ABWA45]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=199544 CES94_RS06050 WP_000081550.1 1154780..1155772(+) (rpoS) [Escherichia coli strain ABWA45]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715