Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CES94_RS04590 Genome accession   NZ_CP022154
Coordinates   872774..873250 (-) Length   158 a.a.
NCBI ID   WP_016243826.1    Uniprot ID   -
Organism   Escherichia coli strain ABWA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 867774..878250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS04570 (CES94_04565) - 869559..871862 (+) 2304 Protein_833 DUF4092 domain-containing protein -
  CES94_RS04575 (CES94_04570) - 871858..872109 (-) 252 Protein_834 TA system toxin CbtA family protein -
  CES94_RS04580 (CES94_04575) yafW 872199..872525 (-) 327 WP_016240264.1 type IV toxin-antitoxin system antitoxin YafW -
  CES94_RS04585 (CES94_04580) - 872544..872765 (-) 222 WP_016239820.1 DUF987 domain-containing protein -
  CES94_RS04590 (CES94_04585) radC 872774..873250 (-) 477 WP_016243826.1 RadC family protein Machinery gene
  CES94_RS04595 (CES94_04590) - 873266..873724 (-) 459 WP_000211838.1 antirestriction protein -
  CES94_RS04600 (CES94_04595) - 873822..874061 (-) 240 WP_000194654.1 DUF905 family protein -
  CES94_RS04605 (CES94_04605) - 874156..874860 (-) 705 WP_001067855.1 IS6-like element IS26 family transposase -
  CES94_RS29140 - 875222..875398 (+) 177 WP_157698491.1 hypothetical protein -
  CES94_RS04620 (CES94_04620) tnpB 875858..876205 (+) 348 WP_000609174.1 IS66 family insertion sequence element accessory protein TnpB -
  CES94_RS04625 (CES94_04625) - 876255..877790 (+) 1536 WP_016239903.1 IS66 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18124.81 Da        Isoelectric Point: 8.6685

>NTDB_id=199540 CES94_RS04590 WP_016243826.1 872774..873250(-) (radC) [Escherichia coli strain ABWA45]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTYAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199540 CES94_RS04590 WP_016243826.1 872774..873250(-) (radC) [Escherichia coli strain ABWA45]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCTACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38