Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CES94_RS00380 Genome accession   NZ_CP022154
Coordinates   74570..75238 (+) Length   222 a.a.
NCBI ID   WP_001295236.1    Uniprot ID   -
Organism   Escherichia coli strain ABWA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69570..80238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS00345 (CES94_00345) yicC 69590..70453 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  CES94_RS00355 (CES94_00355) rph 70580..71296 (+) 717 WP_001247093.1 ribonuclease PH -
  CES94_RS00360 (CES94_00360) pyrE 71361..72002 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  CES94_RS00365 (CES94_00365) slmA 72039..72635 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CES94_RS00370 (CES94_00370) dut 72742..73200 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CES94_RS00375 (CES94_00375) coaBC 73178..74398 (-) 1221 WP_000050109.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CES94_RS00380 (CES94_00380) radC 74570..75238 (+) 669 WP_001295236.1 DNA repair protein RadC Machinery gene
  CES94_RS00385 (CES94_00385) rpmB 75455..75691 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CES94_RS00390 (CES94_00390) rpmG 75712..75879 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CES94_RS00395 (CES94_00395) mutM 75977..76786 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CES94_RS00400 (CES94_00400) coaD 76825..77304 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CES94_RS00405 (CES94_00405) waaA 77312..78589 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CES94_RS00410 (CES94_00410) rfaQ 79002..80060 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25200.31 Da        Isoelectric Point: 8.4958

>NTDB_id=199525 CES94_RS00380 WP_001295236.1 74570..75238(+) (radC) [Escherichia coli strain ABWA45]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMRAESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=199525 CES94_RS00380 WP_001295236.1 74570..75238(+) (radC) [Escherichia coli strain ABWA45]
GTGAAAAATAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGCAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment