Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEQ26_RS21500 Genome accession   NZ_CP022086
Coordinates   3912780..3913256 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O104:H4 strain FDAARGOS_348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3907780..3918256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ26_RS21470 (CEQ26_21480) - 3907904..3910750 (+) 2847 WP_000820574.1 Ag43/Cah family autotransporter adhesin -
  CEQ26_RS21475 (CEQ26_21485) - 3910821..3911016 (+) 196 Protein_3808 DUF905 family protein -
  CEQ26_RS21485 (CEQ26_21495) - 3911134..3911952 (+) 819 WP_001234716.1 DUF932 domain-containing protein -
  CEQ26_RS29520 - 3911952..3912125 (+) 174 WP_001183321.1 hypothetical protein -
  CEQ26_RS21495 (CEQ26_21505) - 3912291..3912764 (+) 474 WP_001387789.1 antirestriction protein -
  CEQ26_RS21500 (CEQ26_21510) radC 3912780..3913256 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CEQ26_RS21505 (CEQ26_21515) - 3913319..3913540 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  CEQ26_RS21510 (CEQ26_21525) - 3913703..3914080 (+) 378 WP_001390338.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CEQ26_RS21515 (CEQ26_21530) - 3914127..3914504 (+) 378 WP_001094437.1 TA system toxin CbtA family protein -
  CEQ26_RS21520 (CEQ26_21535) - 3914501..3914989 (+) 489 WP_000761716.1 DUF5983 family protein -
  CEQ26_RS21525 (CEQ26_21540) - 3915009..3915206 (+) 198 WP_000772032.1 DUF957 domain-containing protein -
  CEQ26_RS21530 (CEQ26_21545) - 3915291..3916136 (+) 846 WP_001274561.1 DUF4942 domain-containing protein -
  CEQ26_RS29995 (CEQ26_21550) rhuM 3916371..3916532 (+) 162 Protein_3819 RhuM family protein -
  CEQ26_RS21545 (CEQ26_21555) setC 3916929..3918113 (+) 1185 WP_001172875.1 sugar efflux transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=199498 CEQ26_RS21500 WP_001186773.1 3912780..3913256(+) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199498 CEQ26_RS21500 WP_001186773.1 3912780..3913256(+) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCTCTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392