Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEQ26_RS21050 Genome accession   NZ_CP022086
Coordinates   3844257..3844925 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli O104:H4 strain FDAARGOS_348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3839257..3849925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ26_RS21020 (CEQ26_21035) rfaQ 3839435..3840493 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CEQ26_RS21025 (CEQ26_21040) waaA 3840906..3842183 (+) 1278 WP_000891571.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CEQ26_RS21030 (CEQ26_21045) coaD 3842191..3842670 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CEQ26_RS21035 (CEQ26_21050) mutM 3842709..3843518 (-) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CEQ26_RS21040 (CEQ26_21055) rpmG 3843616..3843783 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CEQ26_RS21045 (CEQ26_21060) rpmB 3843804..3844040 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CEQ26_RS21050 (CEQ26_21065) radC 3844257..3844925 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CEQ26_RS21055 (CEQ26_21070) coaBC 3845097..3846317 (+) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CEQ26_RS21060 (CEQ26_21075) dut 3846295..3846753 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CEQ26_RS21065 (CEQ26_21080) slmA 3846860..3847456 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CEQ26_RS21070 (CEQ26_21085) pyrE 3847493..3848134 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CEQ26_RS21075 (CEQ26_21090) rph 3848200..3848916 (-) 717 WP_001247089.1 ribonuclease PH -
  CEQ26_RS21085 (CEQ26_21100) yicC 3849043..3849906 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=199496 CEQ26_RS21050 WP_001298959.1 3844257..3844925(-) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=199496 CEQ26_RS21050 WP_001298959.1 3844257..3844925(-) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment