Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEQ26_RS11570 Genome accession   NZ_CP022086
Coordinates   1995438..1995914 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O104:H4 strain FDAARGOS_348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1990438..2000914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ26_RS11535 (CEQ26_11585) - 1990602..1991507 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  CEQ26_RS11540 (CEQ26_11590) - 1991504..1992574 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CEQ26_RS11545 (CEQ26_11595) - 1992710..1993393 (+) 684 WP_000775500.1 hypothetical protein -
  CEQ26_RS11550 (CEQ26_11600) - 1993409..1993819 (+) 411 WP_000846713.1 hypothetical protein -
  CEQ26_RS11560 (CEQ26_11610) - 1994040..1994861 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  CEQ26_RS11565 (CEQ26_11615) - 1994943..1995422 (+) 480 WP_000860076.1 antirestriction protein -
  CEQ26_RS11570 (CEQ26_11620) radC 1995438..1995914 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CEQ26_RS11575 (CEQ26_11625) yeeT 1995977..1996198 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CEQ26_RS11580 (CEQ26_11630) cbeA 1996272..1996640 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CEQ26_RS11585 (CEQ26_11635) cbtA 1996729..1997102 (+) 374 Protein_2003 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CEQ26_RS11590 (CEQ26_11645) yeeW 1997099..1997293 (+) 195 WP_000988600.1 DUF5983 family protein -
  CEQ26_RS11595 (CEQ26_29155) - 1997339..1997419 (+) 81 Protein_2005 hypothetical protein -
  CEQ26_RS11605 (CEQ26_29165) - 1997908..1998090 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CEQ26_RS11610 (CEQ26_11655) tmaR 1998191..1998520 (-) 330 WP_000450409.1 DUF496 family protein -
  CEQ26_RS11615 (CEQ26_11660) - 1998692..1999210 (-) 519 Protein_2008 hypothetical protein -
  CEQ26_RS11620 (CEQ26_11665) - 1999305..2000285 (-) 981 WP_000399648.1 IS110-like element IS621 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=199463 CEQ26_RS11570 WP_001186773.1 1995438..1995914(+) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199463 CEQ26_RS11570 WP_001186773.1 1995438..1995914(+) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment