Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEQ26_RS05035 Genome accession   NZ_CP022086
Coordinates   827730..828206 (+) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli O104:H4 strain FDAARGOS_348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822730..833206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ26_RS04995 (CEQ26_05070) - 822901..823311 (+) 411 WP_000846716.1 hypothetical protein -
  CEQ26_RS05000 (CEQ26_05075) - 823408..823842 (+) 435 WP_001309734.1 transposase -
  CEQ26_RS05005 (CEQ26_05080) tnpB 823839..824189 (+) 351 WP_000624688.1 IS66 family insertion sequence element accessory protein TnpB -
  CEQ26_RS05010 (CEQ26_05085) - 824220..825833 (+) 1614 WP_000080172.1 IS66-like element ISEc43 family transposase -
  CEQ26_RS05020 (CEQ26_05095) - 826081..826902 (+) 822 WP_001241709.1 DUF932 domain-containing protein -
  CEQ26_RS05025 (CEQ26_05100) - 826902..827147 (+) 246 WP_001164966.1 hypothetical protein -
  CEQ26_RS05030 (CEQ26_05105) - 827241..827714 (+) 474 WP_000855049.1 antirestriction protein -
  CEQ26_RS05035 (CEQ26_05110) radC 827730..828206 (+) 477 WP_001186756.1 RadC family protein Machinery gene
  CEQ26_RS05040 (CEQ26_05115) - 828269..828490 (+) 222 WP_000692357.1 DUF987 domain-containing protein -
  CEQ26_RS05045 (CEQ26_05120) cbeA 828566..828919 (+) 354 WP_001285568.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CEQ26_RS05050 (CEQ26_05125) - 829010..829384 (+) 375 WP_000771609.1 TA system toxin CbtA family protein -
  CEQ26_RS05055 (CEQ26_05130) - 829381..829872 (+) 492 WP_000976860.1 DUF5983 family protein -
  CEQ26_RS05060 (CEQ26_05135) - 829884..830081 (+) 198 WP_000839270.1 DUF957 domain-containing protein -
  CEQ26_RS05065 (CEQ26_05140) - 830166..831008 (+) 843 WP_001274560.1 DUF4942 domain-containing protein -
  CEQ26_RS05075 (CEQ26_05150) ghrA 831479..832417 (+) 939 WP_000351313.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=199451 CEQ26_RS05035 WP_001186756.1 827730..828206(+) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199451 CEQ26_RS05035 WP_001186756.1 827730..828206(+) (radC) [Escherichia coli O104:H4 strain FDAARGOS_348]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCTTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399