Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J93_RS06160 Genome accession   NZ_CP022079
Coordinates   1125573..1126067 (+) Length   164 a.a.
NCBI ID   WP_088585149.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_265     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120573..1131067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J93_RS06145 (A6J93_06145) - 1121959..1123137 (-) 1179 WP_002884426.1 metal-dependent hydrolase -
  A6J93_RS06150 (A6J93_06150) gpsA 1123147..1124043 (-) 897 WP_079264017.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  A6J93_RS06155 (A6J93_06155) gatB 1124040..1125458 (-) 1419 WP_002873172.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  A6J93_RS06160 (A6J93_06160) luxS 1125573..1126067 (+) 495 WP_088585149.1 S-ribosylhomocysteine lyase Regulator
  A6J93_RS06165 (A6J93_06165) - 1126379..1127371 (+) 993 WP_002856389.1 isopenicillin N synthase family oxygenase -
  A6J93_RS06170 (A6J93_06170) - 1127381..1128151 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  A6J93_RS06175 (A6J93_06175) metE 1128163..1130427 (+) 2265 WP_002877092.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18272.21 Da        Isoelectric Point: 5.9947

>NTDB_id=199372 A6J93_RS06160 WP_088585149.1 1125573..1126067(+) (luxS) [Campylobacter jejuni strain FDAARGOS_265]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=199372 A6J93_RS06160 WP_088585149.1 1125573..1126067(+) (luxS) [Campylobacter jejuni strain FDAARGOS_265]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment