Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   A6J91_RS04910 Genome accession   NZ_CP022077
Coordinates   961678..962061 (-) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain FDAARGOS_263     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956678..967061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J91_RS04885 (A6J91_04885) aspS 957242..958993 (+) 1752 WP_002871806.1 aspartate--tRNA ligase -
  A6J91_RS04890 (A6J91_04890) adk 958990..959568 (+) 579 WP_002858481.1 adenylate kinase -
  A6J91_RS04895 (A6J91_04895) ppa 959578..960096 (+) 519 WP_002858521.1 inorganic diphosphatase -
  A6J91_RS04900 (A6J91_04900) msrA 960137..960634 (+) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  A6J91_RS04905 (A6J91_04905) - 960810..961649 (-) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A6J91_RS04910 (A6J91_04910) dprB 961678..962061 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  A6J91_RS04915 (A6J91_04915) dprA 962058..962831 (-) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  A6J91_RS04920 (A6J91_04920) - 962821..963903 (-) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  A6J91_RS04925 (A6J91_04925) ilvC 963907..964929 (-) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  A6J91_RS04930 (A6J91_04930) - 965048..966982 (+) 1935 WP_010891871.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=199335 A6J91_RS04910 WP_002852281.1 961678..962061(-) (dprB) [Campylobacter jejuni strain FDAARGOS_263]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=199335 A6J91_RS04910 WP_002852281.1 961678..962061(-) (dprB) [Campylobacter jejuni strain FDAARGOS_263]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449