Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J90_RS07430 Genome accession   NZ_CP022076
Coordinates   1407999..1408493 (+) Length   164 a.a.
NCBI ID   WP_002855991.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_262     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402999..1413493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J90_RS07415 (A6J90_07415) - 1404385..1405563 (-) 1179 WP_002882219.1 metal-dependent hydrolase -
  A6J90_RS07420 (A6J90_07420) gpsA 1405573..1406469 (-) 897 WP_079263844.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  A6J90_RS07425 (A6J90_07425) gatB 1406466..1407884 (-) 1419 WP_002856133.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  A6J90_RS07430 (A6J90_07430) luxS 1407999..1408493 (+) 495 WP_002855991.1 S-ribosylhomocysteine lyase Regulator
  A6J90_RS07435 (A6J90_07435) - 1408804..1409796 (+) 993 WP_002882217.1 isopenicillin N synthase family oxygenase -
  A6J90_RS07440 (A6J90_07440) - 1409807..1410577 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  A6J90_RS07445 (A6J90_07445) metE 1410589..1412853 (+) 2265 WP_002882215.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18258.18 Da        Isoelectric Point: 5.9947

>NTDB_id=199285 A6J90_RS07430 WP_002855991.1 1407999..1408493(+) (luxS) [Campylobacter jejuni strain FDAARGOS_262]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=199285 A6J90_RS07430 WP_002855991.1 1407999..1408493(+) (luxS) [Campylobacter jejuni strain FDAARGOS_262]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707