Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6J90_RS06810 Genome accession   NZ_CP022076
Coordinates   1285664..1286218 (+) Length   184 a.a.
NCBI ID   WP_002882609.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_262     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1280664..1291218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J90_RS06785 (A6J90_06785) rseP 1280972..1282078 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  A6J90_RS06790 (A6J90_06790) - 1282071..1282931 (+) 861 WP_002882614.1 VirK family antimicrobial peptide resistance protein -
  A6J90_RS09520 - 1282947..1283348 (-) 402 WP_172669976.1 hypothetical protein -
  A6J90_RS09525 - 1283375..1283923 (-) 549 WP_172669975.1 TIM barrel protein -
  A6J90_RS09975 (A6J90_06800) - 1283920..1285024 (-) 1105 Protein_1312 MFS transporter -
  A6J90_RS06805 (A6J90_06805) rpsF 1285278..1285655 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  A6J90_RS06810 (A6J90_06810) ssb 1285664..1286218 (+) 555 WP_002882609.1 single-stranded DNA-binding protein Machinery gene
  A6J90_RS06815 (A6J90_06815) rpsR 1286229..1286489 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  A6J90_RS06820 (A6J90_06820) lon 1286550..1288925 (-) 2376 WP_002866098.1 endopeptidase La -
  A6J90_RS06825 (A6J90_06825) - 1288942..1289589 (-) 648 WP_002882608.1 outer membrane protein assembly factor BamD -
  A6J90_RS06830 (A6J90_06830) fliW 1289750..1290139 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  A6J90_RS06835 (A6J90_06835) proC 1290139..1290870 (+) 732 WP_002882606.1 pyrroline-5-carboxylate reductase Machinery gene
  A6J90_RS06840 (A6J90_06840) ctsT 1290867..1291169 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20824.71 Da        Isoelectric Point: 5.0431

>NTDB_id=199278 A6J90_RS06810 WP_002882609.1 1285664..1286218(+) (ssb) [Campylobacter jejuni strain FDAARGOS_262]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWNDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQN
PQHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=199278 A6J90_RS06810 WP_002882609.1 1285664..1286218(+) (ssb) [Campylobacter jejuni strain FDAARGOS_262]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAATGATCAAAATGGACAAAATCGCTCTAAGCATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATC
AAAGCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAAC
CCACAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.83

100

0.397

Multiple sequence alignment