Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | CEP72_RS23310 | Genome accession | NZ_CP022050 |
| Coordinates | 4465998..4466474 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O157 strain FDAARGOS_293 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4460998..4471474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP72_RS23280 (CEP72_23295) | - | 4462276..4463181 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| CEP72_RS23285 (CEP72_23300) | - | 4463178..4464248 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| CEP72_RS23300 (CEP72_23315) | - | 4464588..4465406 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| CEP72_RS23305 (CEP72_23320) | - | 4465497..4465982 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| CEP72_RS23310 (CEP72_23325) | radC | 4465998..4466474 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| CEP72_RS23315 (CEP72_23330) | - | 4466537..4466758 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| CEP72_RS23320 (CEP72_23340) | - | 4466921..4467295 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| CEP72_RS23325 (CEP72_23345) | - | 4467342..4467716 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| CEP72_RS23330 (CEP72_23350) | - | 4467713..4468204 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| CEP72_RS23335 (CEP72_23355) | - | 4468216..4468413 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| CEP72_RS23340 (CEP72_23360) | - | 4468498..4469340 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| CEP72_RS23350 (CEP72_23370) | ghrA | 4469811..4470749 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=199250 CEP72_RS23310 WP_001186738.1 4465998..4466474(+) (radC) [Escherichia coli O157 strain FDAARGOS_293]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=199250 CEP72_RS23310 WP_001186738.1 4465998..4466474(+) (radC) [Escherichia coli O157 strain FDAARGOS_293]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |