Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEP72_RS13760 Genome accession   NZ_CP022050
Coordinates   2635318..2635986 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O157 strain FDAARGOS_293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2630318..2640986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP72_RS13725 (CEP72_13730) yicC 2630337..2631200 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CEP72_RS13735 (CEP72_13740) rph 2631327..2632043 (+) 717 WP_001247093.1 ribonuclease PH -
  CEP72_RS13740 (CEP72_13745) pyrE 2632109..2632750 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  CEP72_RS13745 (CEP72_13750) slmA 2632787..2633383 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CEP72_RS13750 (CEP72_13755) dut 2633490..2633948 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CEP72_RS13755 (CEP72_13760) coaBC 2633926..2635146 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CEP72_RS13760 (CEP72_13765) radC 2635318..2635986 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CEP72_RS13765 (CEP72_13770) rpmB 2636203..2636439 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CEP72_RS13770 (CEP72_13775) rpmG 2636460..2636627 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CEP72_RS13775 (CEP72_13780) mutM 2636725..2637534 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CEP72_RS13780 (CEP72_13785) coaD 2637573..2638052 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CEP72_RS13785 (CEP72_13790) waaA 2638060..2639337 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CEP72_RS13790 (CEP72_13795) rfaQ 2639750..2640808 (+) 1059 WP_088592022.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=199222 CEP72_RS13760 WP_001297375.1 2635318..2635986(+) (radC) [Escherichia coli O157 strain FDAARGOS_293]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=199222 CEP72_RS13760 WP_001297375.1 2635318..2635986(+) (radC) [Escherichia coli O157 strain FDAARGOS_293]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496