Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD799_RS30835 Genome accession   NZ_CP022002
Coordinates   6437373..6437870 (+) Length   165 a.a.
NCBI ID   WP_033982593.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6432373..6442870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD799_RS34010 - 6433240..6433683 (+) 444 WP_126870448.1 hypothetical protein -
  CD799_RS30815 (CD799_30815) - 6433909..6434181 (+) 273 WP_003150493.1 hypothetical protein -
  CD799_RS30820 (CD799_30820) - 6434283..6435251 (+) 969 WP_088376787.1 DUF932 domain-containing protein -
  CD799_RS30825 (CD799_30825) - 6435326..6436330 (+) 1005 WP_073653109.1 YqaJ viral recombinase family protein -
  CD799_RS30830 (CD799_30830) - 6436419..6437333 (+) 915 WP_088376788.1 hydrolase or metal-binding protein -
  CD799_RS30835 (CD799_30835) radC 6437373..6437870 (+) 498 WP_033982593.1 RadC family protein Machinery gene
  CD799_RS30840 (CD799_30840) - 6437889..6438077 (+) 189 WP_033982590.1 hypothetical protein -
  CD799_RS30845 (CD799_30845) - 6438116..6438445 (+) 330 WP_033982589.1 hypothetical protein -
  CD799_RS30850 (CD799_30850) - 6438448..6438795 (-) 348 WP_033982605.1 helix-turn-helix domain-containing protein -
  CD799_RS34015 - 6439144..6440343 (+) 1200 WP_126624786.1 toxin-antitoxin system YwqK family antitoxin -
  CD799_RS30865 (CD799_30865) - 6440415..6441116 (-) 702 WP_073653112.1 inovirus Gp2 family protein -
  CD799_RS34830 - 6441788..6442066 (+) 279 WP_332457792.1 hypothetical protein -
  CD799_RS30870 (CD799_30870) - 6442033..6442830 (+) 798 WP_332457793.1 WYL domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18041.80 Da        Isoelectric Point: 7.2510

>NTDB_id=199168 CD799_RS30835 WP_033982593.1 6437373..6437870(+) (radC) [Pseudomonas aeruginosa strain Pa1242]
MKSPTLKAGKIAGSYIIDSPVTEADILQLALQLAARRLARGKPLTDPLQVAEHLQVLLQDHEHEVFALLLLDGKHRVIGF
RELFRGTLDGASVYPREVLKTVLEHNAAGVILVHNHPSGDPTPSQADHRLTNTLKTALELVGTRTLDHIVVGREGFISLA
QQGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=199168 CD799_RS30835 WP_033982593.1 6437373..6437870(+) (radC) [Pseudomonas aeruginosa strain Pa1242]
ATGAAATCGCCCACGCTCAAGGCCGGCAAAATTGCCGGCAGCTACATCATCGACAGCCCCGTCACCGAAGCTGACATCCT
ACAACTGGCGTTGCAATTGGCCGCTCGGCGCCTGGCCAGAGGGAAACCGCTGACCGATCCGCTGCAGGTTGCCGAGCATC
TACAAGTACTGCTGCAGGACCATGAACACGAGGTATTCGCCCTGTTACTGCTCGACGGCAAGCATAGGGTCATCGGTTTC
CGAGAGCTGTTCAGAGGAACACTGGACGGAGCCAGCGTCTATCCCCGCGAAGTACTCAAGACCGTGCTCGAACACAACGC
GGCGGGCGTGATCCTGGTACACAACCATCCTTCCGGCGATCCAACCCCCAGCCAGGCAGACCATCGCCTGACTAACACGC
TAAAGACTGCACTGGAACTGGTCGGCACCCGCACGCTGGATCACATTGTGGTCGGCCGCGAAGGCTTCATCTCCCTGGCC
CAACAGGGTTACCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

39.024

99.394

0.388

Multiple sequence alignment