Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD799_RS23905 Genome accession   NZ_CP022002
Coordinates   4985104..4985598 (+) Length   164 a.a.
NCBI ID   WP_003821118.1    Uniprot ID   A0A939GVA8
Organism   Pseudomonas aeruginosa strain Pa1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4980104..4990598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD799_RS23890 (CD799_23890) - 4980806..4981246 (+) 441 WP_003821115.1 TIGR03751 family conjugal transfer lipoprotein -
  CD799_RS23895 (CD799_23895) - 4981246..4984122 (+) 2877 WP_003821116.1 conjugative transfer ATPase -
  CD799_RS23900 (CD799_23900) - 4984136..4984921 (+) 786 WP_012614069.1 DsbA family protein -
  CD799_RS23905 (CD799_23905) radC 4985104..4985598 (+) 495 WP_003821118.1 JAB domain-containing protein Machinery gene
  CD799_RS23910 (CD799_23910) - 4985761..4986207 (+) 447 WP_003821119.1 TIGR03757 family integrating conjugative element protein -
  CD799_RS23915 (CD799_23915) - 4986204..4987151 (+) 948 WP_012614067.1 TIGR03756 family integrating conjugative element protein -
  CD799_RS23920 (CD799_23920) - 4987161..4988558 (+) 1398 WP_003821123.1 integrating conjugative element protein -
  CD799_RS23925 (CD799_23925) - 4988555..4988926 (+) 372 WP_003821125.1 hypothetical protein -
  CD799_RS23930 (CD799_23930) - 4988942..4990462 (+) 1521 WP_003821126.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18063.80 Da        Isoelectric Point: 6.7513

>NTDB_id=199149 CD799_RS23905 WP_003821118.1 4985104..4985598(+) (radC) [Pseudomonas aeruginosa strain Pa1242]
MSLVANDSCVEPRFAPMSQSDDWIIRQAIALLEQRVFKKGPSLERPAAVKDYLRLKLAAEPNEVFAIVFLNSMHEVLAYE
PMFRGTIHSTSVHARPIVQRALELNAAAVIFSHQHPSGCTEPSSADRALTQTLRAALSLIDVRVLDHLIVGQGTPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=199149 CD799_RS23905 WP_003821118.1 4985104..4985598(+) (radC) [Pseudomonas aeruginosa strain Pa1242]
ATGTCTCTCGTCGCCAACGACTCCTGCGTGGAGCCACGTTTTGCCCCCATGTCCCAATCCGATGACTGGATCATCCGGCA
AGCCATCGCGCTGCTGGAGCAGCGGGTCTTCAAGAAGGGGCCATCCCTGGAGAGGCCTGCCGCCGTCAAGGACTACCTGC
GCCTGAAACTGGCCGCCGAGCCCAATGAAGTCTTCGCCATCGTGTTCCTCAACAGCATGCACGAGGTGCTGGCCTACGAG
CCGATGTTCAGAGGCACGATCCATTCGACCTCGGTGCATGCGCGTCCGATCGTGCAGCGTGCCTTGGAACTGAATGCGGC
AGCGGTCATTTTTTCTCACCAACACCCTTCGGGCTGCACGGAGCCGTCGAGCGCGGACCGTGCGTTGACCCAAACGCTGA
GGGCCGCGTTGTCGCTGATCGACGTGAGGGTGCTGGATCACCTCATCGTCGGCCAGGGCACGCCGTACTCGTTCGCGGAA
TCCGGCCTGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A939GVA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.151

89.024

0.384