Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD799_RS22295 Genome accession   NZ_CP022002
Coordinates   4697963..4698472 (-) Length   169 a.a.
NCBI ID   WP_023104517.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4692963..4703472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD799_RS22280 (CD799_22280) - 4693472..4694227 (-) 756 WP_023104513.1 hypothetical protein -
  CD799_RS22285 (CD799_22285) - 4694486..4696507 (-) 2022 WP_088376749.1 ParB/RepB/Spo0J family partition protein -
  CD799_RS22290 (CD799_22290) - 4696586..4697416 (-) 831 WP_088376750.1 DUF932 domain-containing protein -
  CD799_RS22295 (CD799_22295) radC 4697963..4698472 (-) 510 WP_023104517.1 RadC family protein Machinery gene
  CD799_RS22300 (CD799_22300) - 4698982..4700412 (+) 1431 WP_088376682.1 IS1182 family transposase -
  CD799_RS22305 (CD799_22305) - 4700702..4703398 (-) 2697 WP_088376751.1 ATP-dependent DNA helicase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18913.54 Da        Isoelectric Point: 6.3383

>NTDB_id=199146 CD799_RS22295 WP_023104517.1 4697963..4698472(-) (radC) [Pseudomonas aeruginosa strain Pa1242]
MSQLSFSSFDSILLVRDAQGRYLPASADQILSMARQVIDQKYQRGALFTEPELVKNYLRTKLASFEHEVFAALFLDNQHR
RLEYVELFRGTIDAAAVYPREVVKEALRVNAAAVIFSHNHPSGNPEPSQADKVLTQRLKEALALVEVRTLDHIIVGGEAT
TSFAEQGLL

Nucleotide


Download         Length: 510 bp        

>NTDB_id=199146 CD799_RS22295 WP_023104517.1 4697963..4698472(-) (radC) [Pseudomonas aeruginosa strain Pa1242]
ATGTCGCAACTTTCCTTTTCCTCGTTCGACTCCATTCTGCTGGTGCGTGACGCACAGGGGCGTTACCTGCCCGCGTCTGC
AGATCAGATCCTCAGCATGGCGCGCCAGGTAATCGATCAGAAATACCAGCGTGGCGCGCTGTTCACCGAGCCTGAGCTGG
TCAAGAACTACCTGCGCACCAAGCTGGCCAGCTTCGAGCACGAGGTATTCGCGGCGCTGTTCCTCGACAACCAGCATCGG
CGGCTGGAGTACGTAGAGTTGTTCCGCGGCACCATCGATGCGGCGGCGGTATATCCACGCGAAGTGGTGAAGGAGGCATT
GCGCGTCAACGCAGCGGCGGTGATCTTCTCGCACAACCATCCGAGCGGAAATCCAGAACCCAGCCAGGCGGACAAGGTGC
TGACCCAGCGCCTCAAGGAGGCCCTGGCGCTGGTGGAGGTGCGCACGCTGGATCACATCATCGTCGGCGGCGAGGCCACT
ACGTCATTTGCGGAGCAGGGGCTGCTCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

82.84

0.408