Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD800_RS35545 Genome accession   NZ_CP022001
Coordinates   7368990..7369499 (-) Length   169 a.a.
NCBI ID   WP_019726271.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7363990..7374499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD800_RS35515 (CD800_35515) - 7364094..7364303 (-) 210 WP_019726277.1 hypothetical protein -
  CD800_RS35520 (CD800_35520) - 7364365..7366422 (-) 2058 WP_019726276.1 ParB/RepB/Spo0J family partition protein -
  CD800_RS35525 (CD800_35525) - 7366487..7367311 (-) 825 WP_025981539.1 DUF932 domain-containing protein -
  CD800_RS35535 (CD800_35535) - 7368012..7368290 (-) 279 WP_019726273.1 hypothetical protein -
  CD800_RS35540 (CD800_35540) - 7368356..7368706 (-) 351 WP_019726272.1 DUF2958 domain-containing protein -
  CD800_RS35545 (CD800_35545) radC 7368990..7369499 (-) 510 WP_019726271.1 RadC family protein Machinery gene
  CD800_RS35550 (CD800_35550) - 7369864..7370928 (-) 1065 WP_019726270.1 PDDEXK nuclease domain-containing protein -
  CD800_RS35555 (CD800_35555) - 7370925..7372124 (-) 1200 WP_019726269.1 tyrosine-type recombinase/integrase -
  CD800_RS35560 (CD800_35560) tonB1 7372351..7373382 (-) 1032 WP_003121399.1 energy transducer TonB1 -
  CD800_RS35565 (CD800_35565) - 7373475..7374443 (-) 969 WP_023082784.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18488.99 Da        Isoelectric Point: 6.2902

>NTDB_id=199071 CD800_RS35545 WP_019726271.1 7368990..7369499(-) (radC) [Pseudomonas aeruginosa strain Pa1207]
MSQLSFSSFDAALMVRDSQGHYLPATADQILEAARQAIEHKMQRGASFSSPSEVKEYLRAKLAGFEHEVFAVLFLDSQHR
LIEYAEMFHGTIDSASVYPREVVKEALRLNAAAVIVSHNHPSGNPEPSAADRALTLQLKSALALVDVRTLDHIIVAGSLT
TSFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=199071 CD800_RS35545 WP_019726271.1 7368990..7369499(-) (radC) [Pseudomonas aeruginosa strain Pa1207]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGCCGCGCTGATGGTGCGCGACTCCCAAGGTCATTACCTGCCGGCGACGGC
CGACCAGATTCTGGAGGCCGCGCGCCAGGCCATCGAGCACAAGATGCAGCGCGGTGCCTCATTCAGTTCACCGTCGGAAG
TCAAGGAGTACCTGCGCGCCAAACTGGCCGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCCTCGATTCGCAGCATCGC
CTTATCGAGTATGCCGAGATGTTCCACGGCACCATCGACAGCGCATCGGTGTATCCGCGCGAAGTGGTGAAGGAAGCGCT
GCGGCTCAACGCGGCAGCGGTCATCGTTTCGCACAACCACCCGAGCGGCAATCCAGAGCCAAGTGCGGCCGACAGGGCAT
TGACGTTGCAACTCAAGAGCGCGCTGGCGCTGGTGGACGTTCGCACGTTGGATCACATCATCGTGGCGGGCAGCCTCACT
ACGTCCTTCGCCGAACGTGGCTTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.429

82.84

0.385

Multiple sequence alignment