Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD800_RS30545 Genome accession   NZ_CP022001
Coordinates   6346047..6346556 (-) Length   169 a.a.
NCBI ID   WP_003092330.1    Uniprot ID   A0ABN4SQN8
Organism   Pseudomonas aeruginosa strain Pa1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6341047..6351556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD800_RS30535 (CD800_30535) - 6342304..6343131 (-) 828 WP_003092327.1 DUF932 domain-containing protein -
  CD800_RS30540 (CD800_30540) - 6343524..6345980 (+) 2457 WP_001223964.1 ATP-binding protein -
  CD800_RS30545 (CD800_30545) radC 6346047..6346556 (-) 510 WP_003092330.1 RadC family protein Machinery gene
  CD800_RS30550 (CD800_30550) - 6346908..6347972 (-) 1065 WP_003092331.1 PDDEXK nuclease domain-containing protein -
  CD800_RS30555 (CD800_30555) - 6347969..6349168 (-) 1200 WP_014603550.1 tyrosine-type recombinase/integrase -
  CD800_RS30560 (CD800_30560) rpsB 6349448..6350188 (-) 741 WP_003092394.1 30S ribosomal protein S2 -
  CD800_RS30565 (CD800_30565) map 6350453..6351238 (+) 786 WP_003092395.1 type I methionyl aminopeptidase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18809.45 Da        Isoelectric Point: 6.6978

>NTDB_id=199061 CD800_RS30545 WP_003092330.1 6346047..6346556(-) (radC) [Pseudomonas aeruginosa strain Pa1207]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMRRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=199061 CD800_RS30545 WP_003092330.1 6346047..6346556(-) (radC) [Pseudomonas aeruginosa strain Pa1207]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCGGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373