Detailed information NTG0199060

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CD800_RS30135
• Genome accession: NZ_CP022001
• Coordinates: 6265835..6266839 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Pa1207
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6260835..6271839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CD800_RS30115 (CD800_30115)	-	6261318..6262325 (+)	1008	WP_003098486.1	TolB family protein	-
CD800_RS30125 (CD800_30125)	mutS	6262451..6265018 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
CD800_RS30130 (CD800_30130)	fdxA	6265085..6265408 (+)	324	WP_003119354.1	ferredoxin FdxA	-
CD800_RS30135 (CD800_30135)	rpoS	6265835..6266839 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CD800_RS30140 (CD800_30140)	-	6266944..6267837 (-)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
CD800_RS30145 (CD800_30145)	-	6267883..6268518 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CD800_RS30150 (CD800_30150)	surE	6268551..6269300 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CD800_RS30155 (CD800_30155)	truD	6269288..6270355 (-)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
CD800_RS30160 (CD800_30160)	ispF	6270352..6270825 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CD800_RS30165 (CD800_30165)	fghA	6270896..6271747 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=199060 CD800_RS30135 WP_003113871.1 6265835..6266839(-) (rpoS) [Pseudomonas aeruginosa strain Pa1207]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=199060 CD800_RS30135 WP_003113871.1 6265835..6266839(-) (rpoS) [Pseudomonas aeruginosa strain Pa1207]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653