Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD800_RS25620 Genome accession   NZ_CP022001
Coordinates   5327311..5327805 (+) Length   164 a.a.
NCBI ID   WP_009518518.1    Uniprot ID   A0A142JIE2
Organism   Pseudomonas aeruginosa strain Pa1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5322311..5332805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD800_RS25605 (CD800_25605) - 5323006..5323455 (+) 450 WP_023098546.1 TIGR03751 family conjugal transfer lipoprotein -
  CD800_RS25610 (CD800_25610) - 5323455..5326346 (+) 2892 WP_023098545.1 conjugative transfer ATPase -
  CD800_RS25615 (CD800_25615) - 5326371..5327135 (+) 765 WP_023098544.1 DsbA family protein -
  CD800_RS25620 (CD800_25620) radC 5327311..5327805 (+) 495 WP_009518518.1 RadC family protein Machinery gene
  CD800_RS25625 (CD800_25625) - 5327969..5328415 (+) 447 WP_009518519.1 TIGR03757 family integrating conjugative element protein -
  CD800_RS25630 (CD800_25630) - 5328412..5329359 (+) 948 WP_009518520.1 TIGR03756 family integrating conjugative element protein -
  CD800_RS25635 (CD800_25635) - 5329369..5330763 (+) 1395 WP_009518521.1 integrating conjugative element protein -
  CD800_RS25640 (CD800_25640) - 5330760..5331119 (+) 360 WP_009518522.1 hypothetical protein -
  CD800_RS25645 (CD800_25645) - 5331134..5332651 (+) 1518 WP_009518523.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17984.83 Da        Isoelectric Point: 5.4985

>NTDB_id=199044 CD800_RS25620 WP_009518518.1 5327311..5327805(+) (radC) [Pseudomonas aeruginosa strain Pa1207]
MSFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLHVKLVAEPNEIFVAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVVQRVLELNAAAVVFAHQHPSGMSEPSIADRVLTQQLQAALALIDVRVLDHIIVGQGAPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=199044 CD800_RS25620 WP_009518518.1 5327311..5327805(+) (radC) [Pseudomonas aeruginosa strain Pa1207]
ATGTCTTTCGTCGTCAATGACTCCTGCCTGGAGTCGCTTTCCGCCATCGCTGCCCAGCACGAGGACTGGATCATCCAGCA
AGCCATTGCACTGCTGGAGAAGCGGGTTTTCAAAGCGGGTCCGAAACTCCTCGACCCCACGGCCGTGCGCGACTACCTGC
ACGTGAAGCTGGTGGCCGAGCCCAACGAAATATTCGTCGCTGTATTCCTTGACAGCATGCATCAGGTGCTGGCCTACGAG
CCGTTGTTCAGGGGCACGATCAACTCGACTTCGGTCTATCCGCGTGTCGTCGTACAGCGTGTGCTGGAATTGAATGCCGC
TGCGGTGGTCTTCGCACATCAGCACCCCTCGGGCATGTCCGAGCCGTCGATCGCGGATCGCGTGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142JIE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.151

89.024

0.384

Multiple sequence alignment