Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CD800_RS25085 Genome accession   NZ_CP022001
Coordinates   5227707..5227895 (+) Length   62 a.a.
NCBI ID   WP_073662603.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa1207     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5222707..5232895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD800_RS25060 (CD800_25060) - 5222789..5224426 (+) 1638 WP_023082362.1 YqaJ viral recombinase family protein -
  CD800_RS25065 (CD800_25065) - 5224548..5225153 (+) 606 WP_004349164.1 3'-5' exonuclease -
  CD800_RS25070 (CD800_25070) ssb 5225157..5225654 (+) 498 WP_023082361.1 single-stranded DNA-binding protein -
  CD800_RS25075 (CD800_25075) - 5225681..5226607 (+) 927 WP_023082360.1 recombination-associated protein RdgC -
  CD800_RS25080 (CD800_25080) yejK 5226634..5227689 (+) 1056 WP_023082359.1 nucleoid-associated protein YejK -
  CD800_RS25085 (CD800_25085) dinR/lexA 5227707..5227895 (+) 189 WP_073662603.1 LexA family protein Regulator
  CD800_RS36125 - 5228061..5228387 (-) 327 WP_124117754.1 hypothetical protein -
  CD800_RS25090 (CD800_25090) - 5228503..5230404 (+) 1902 WP_023082357.1 DNA cytosine methyltransferase -
  CD800_RS25095 (CD800_25095) - 5230419..5230832 (-) 414 WP_021263571.1 hypothetical protein -
  CD800_RS25100 (CD800_25100) - 5231086..5231514 (+) 429 WP_021263570.1 hypothetical protein -
  CD800_RS25105 (CD800_25105) - 5231511..5232167 (+) 657 WP_023082356.1 hypothetical protein -
  CD800_RS25110 (CD800_25110) - 5232164..5232805 (+) 642 WP_023082355.1 hypothetical protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 6994.14 Da        Isoelectric Point: 10.9928

>NTDB_id=199042 CD800_RS25085 WP_073662603.1 5227707..5227895(+) (dinR/lexA) [Pseudomonas aeruginosa strain Pa1207]
MQKETLGHIRAFWAEKGYAPTVAELAAKAGVRQFAIQQRLTALENKGYIQRDPKVARSIRPL

Nucleotide


Download         Length: 189 bp        

>NTDB_id=199042 CD800_RS25085 WP_073662603.1 5227707..5227895(+) (dinR/lexA) [Pseudomonas aeruginosa strain Pa1207]
ATGCAGAAAGAAACGCTCGGGCACATCCGAGCGTTCTGGGCGGAGAAAGGCTACGCACCCACCGTCGCAGAACTGGCAGC
CAAGGCCGGCGTCCGCCAGTTCGCCATCCAGCAGCGCCTGACCGCCCTCGAGAACAAGGGCTACATCCAGCGTGACCCGA
AAGTGGCGCGCAGTATCCGCCCGCTCTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.097

100

0.371

Multiple sequence alignment