Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD800_RS21770 Genome accession   NZ_CP022001
Coordinates   4582603..4583097 (+) Length   164 a.a.
NCBI ID   WP_003149760.1    Uniprot ID   A0A2N8KES8
Organism   Pseudomonas aeruginosa strain Pa1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4577603..4588097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD800_RS21755 (CD800_21755) - 4578306..4578755 (+) 450 WP_003116807.1 TIGR03751 family conjugal transfer lipoprotein -
  CD800_RS21760 (CD800_21760) - 4578755..4581649 (+) 2895 WP_034022491.1 conjugative transfer ATPase -
  CD800_RS21765 (CD800_21765) - 4581663..4582427 (+) 765 WP_034022494.1 DsbA family protein -
  CD800_RS21770 (CD800_21770) radC 4582603..4583097 (+) 495 WP_003149760.1 RadC family protein Machinery gene
  CD800_RS21775 (CD800_21775) - 4583262..4583708 (+) 447 WP_004350615.1 TIGR03757 family integrating conjugative element protein -
  CD800_RS21780 (CD800_21780) - 4583705..4584655 (+) 951 WP_004350617.1 TIGR03756 family integrating conjugative element protein -
  CD800_RS21785 (CD800_21785) - 4584665..4586059 (+) 1395 WP_003149765.1 integrating conjugative element protein -
  CD800_RS21790 (CD800_21790) - 4586056..4586412 (+) 357 WP_003149767.1 hypothetical protein -
  CD800_RS21795 (CD800_21795) - 4586428..4587975 (+) 1548 WP_004350620.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17974.83 Da        Isoelectric Point: 5.9727

>NTDB_id=199035 CD800_RS21770 WP_003149760.1 4582603..4583097(+) (radC) [Pseudomonas aeruginosa strain Pa1207]
MSFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAEPNEIFVAVFLDSMHQVLAYE
PLFRGTINATSVYPRVVVQRVLQLNAAAVVFAHQHPSGISEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=199035 CD800_RS21770 WP_003149760.1 4582603..4583097(+) (radC) [Pseudomonas aeruginosa strain Pa1207]
ATGTCTTTCGTCGTCAATGACTCCTGCCTGGAGTCGCTTTCCGCCATCGCTGCCCAGCACGAGGACTGGATCATCCAGCA
AGCCATTGCGCTGCTGGAGAAGCGGGTTTTCAAAGCGGGTCCGAAACTCCTCGACCCCACGGCCGTGCGCGACTACCTGC
GCGTGAAGCTGGTGGCCGAGCCCAACGAAATATTCGTCGCTGTGTTCCTGGACAGCATGCACCAGGTACTGGCCTACGAG
CCGCTGTTCAGGGGCACGATCAACGCGACTTCGGTCTATCCGCGTGTCGTTGTGCAGCGTGTTCTGCAGTTGAATGCGGC
CGCGGTGGTCTTCGCGCACCAGCACCCCTCGGGCATTTCCGAGCCGTCGAGCGCGGATCGCATGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8KES8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.836

89.024

0.39