Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CD800_RS11115 Genome accession   NZ_CP022001
Coordinates   2334266..2334772 (-) Length   168 a.a.
NCBI ID   WP_003103172.1    Uniprot ID   A0A1H2MSY8
Organism   Pseudomonas aeruginosa strain Pa1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2329266..2339772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD800_RS11085 (CD800_11085) - 2330071..2330895 (-) 825 WP_003107836.1 DUF932 domain-containing protein -
  CD800_RS11095 (CD800_11095) - 2331607..2331885 (-) 279 WP_003103165.1 hypothetical protein -
  CD800_RS11100 (CD800_11100) - 2331951..2332301 (-) 351 WP_003103166.1 DUF2958 domain-containing protein -
  CD800_RS11105 (CD800_11105) - 2332563..2333873 (-) 1311 WP_003103168.1 MFS transporter -
  CD800_RS11110 (CD800_11110) - 2333883..2334140 (-) 258 WP_003103170.1 metal-sensing transcriptional repressor -
  CD800_RS11115 (CD800_11115) radC 2334266..2334772 (-) 507 WP_003103172.1 RadC family protein Machinery gene
  CD800_RS11120 (CD800_11120) - 2335143..2336207 (-) 1065 WP_003103173.1 PDDEXK nuclease domain-containing protein -
  CD800_RS11125 (CD800_11125) - 2336204..2337403 (-) 1200 WP_003103175.1 tyrosine-type recombinase/integrase -
  CD800_RS11130 (CD800_11130) - 2337639..2337866 (-) 228 WP_003085644.1 hypothetical protein -
  CD800_RS11135 (CD800_11135) - 2338427..2338822 (+) 396 WP_003106627.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18620.24 Da        Isoelectric Point: 7.2017

>NTDB_id=199016 CD800_RS11115 WP_003103172.1 2334266..2334772(-) (radC) [Pseudomonas aeruginosa strain Pa1207]
MSQLTLSHDTPLMVRDGRGRYRPADADQILEAARQVIEQKMQRGEAFTSPAAVKDYLRAKLAGFEHEVFAVLFLDTRHRL
IDYVEMFHGTIDAAEVHPREVVKQALRLNAAAVIVSHNHPSGNPEPSAADKAMTSQLRQALALVDVRTLDHIIVAGSRTT
SFAERGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=199016 CD800_RS11115 WP_003103172.1 2334266..2334772(-) (radC) [Pseudomonas aeruginosa strain Pa1207]
ATGTCGCAACTGACCCTCTCTCACGATACCCCGCTGATGGTGCGCGATGGCCGTGGGCGCTATCGGCCGGCGGACGCCGA
CCAGATTCTGGAAGCCGCGCGCCAGGTCATCGAACAGAAGATGCAGCGCGGCGAGGCGTTCACTTCGCCGGCGGCGGTGA
AGGACTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCACGAGGTCTTCGCGGTGTTGTTCCTCGACACGCGCCATCGGCTG
ATCGACTACGTGGAGATGTTCCACGGCACGATCGACGCCGCCGAGGTGCATCCGCGCGAGGTGGTGAAGCAGGCACTGCG
GCTCAATGCAGCGGCGGTCATCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCCGATAAGGCGATGA
CCTCGCAGCTTCGGCAGGCGCTGGCGCTGGTGGACGTTCGCACGCTGGATCACATCATTGTCGCTGGAAGCCGTACCACG
TCATTCGCCGAACGCGGCCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H2MSY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.421

90.476

0.393

Multiple sequence alignment