Detailed information NTG0198784

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CD796_RS07030
• Genome accession: NZ_CP021999
• Coordinates: 1473039..1474043 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Pa84
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1468039..1479043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CD796_RS07000 (CD796_07000)	fghA	1468131..1468982 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
CD796_RS07005 (CD796_07005)	ispF	1469053..1469526 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CD796_RS07010 (CD796_07010)	truD	1469523..1470590 (+)	1068	WP_044061882.1	tRNA pseudouridine(13) synthase TruD	-
CD796_RS07015 (CD796_07015)	surE	1470578..1471327 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CD796_RS07020 (CD796_07020)	-	1471360..1471995 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CD796_RS07025 (CD796_07025)	-	1472041..1472934 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
CD796_RS07030 (CD796_07030)	rpoS	1473039..1474043 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CD796_RS07035 (CD796_07035)	fdxA	1474470..1474793 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CD796_RS07040 (CD796_07040)	mutS	1474860..1477427 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
CD796_RS07050 (CD796_07050)	-	1477553..1478560 (-)	1008	WP_019682219.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=198784 CD796_RS07030 WP_003113871.1 1473039..1474043(+) (rpoS) [Pseudomonas aeruginosa strain Pa84]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=198784 CD796_RS07030 WP_003113871.1 1473039..1474043(+) (rpoS) [Pseudomonas aeruginosa strain Pa84]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653