Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LPB072_RS21660 Genome accession   NZ_CP017476
Coordinates   4668858..4670498 (-) Length   546 a.a.
NCBI ID   WP_066095961.1    Uniprot ID   A0A163C5D7
Organism   Hydrogenophaga crassostreae strain LPB0072     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4663858..4675498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB072_RS21620 (LPB072_21620) - 4663975..4664178 (-) 204 WP_066095947.1 hypothetical protein -
  LPB072_RS21625 (LPB072_21625) - 4664208..4664600 (-) 393 WP_066095950.1 glutathione S-transferase N-terminal domain-containing protein -
  LPB072_RS21630 (LPB072_21630) - 4664613..4665134 (-) 522 WP_066095953.1 DUF1993 family protein -
  LPB072_RS21635 (LPB072_21635) - 4665206..4665619 (-) 414 WP_066095956.1 ACT domain-containing protein -
  LPB072_RS21640 (LPB072_21640) - 4665721..4666170 (-) 450 WP_066096234.1 SRPBCC domain-containing protein -
  LPB072_RS21645 (LPB072_21645) - 4666304..4666858 (-) 555 WP_231943339.1 nucleotidyltransferase family protein -
  LPB072_RS21650 (LPB072_21650) - 4666920..4667351 (-) 432 WP_066096239.1 putative toxin-antitoxin system toxin component, PIN family -
  LPB072_RS21655 (LPB072_21655) - 4667369..4668706 (-) 1338 WP_066095958.1 class I SAM-dependent RNA methyltransferase -
  LPB072_RS21660 (LPB072_21660) rpoN/rpoN1 4668858..4670498 (-) 1641 WP_066095961.1 RNA polymerase factor sigma-54 Machinery gene
  LPB072_RS21665 (LPB072_21665) lptB 4670556..4671305 (-) 750 WP_066095964.1 LPS export ABC transporter ATP-binding protein -
  LPB072_RS21670 (LPB072_21670) lptA 4671344..4671982 (-) 639 WP_066095967.1 lipopolysaccharide transport periplasmic protein LptA -
  LPB072_RS21675 (LPB072_21675) - 4672125..4672760 (-) 636 WP_066095970.1 thiol:disulfide interchange protein DsbA/DsbL -
  LPB072_RS21680 (LPB072_21680) - 4672876..4673571 (-) 696 WP_066095972.1 SPOR domain-containing protein -
  LPB072_RS21685 (LPB072_21685) argS 4673586..4675271 (-) 1686 WP_066095974.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 60075.44 Da        Isoelectric Point: 4.5784

>NTDB_id=198612 LPB072_RS21660 WP_066095961.1 4668858..4670498(-) (rpoN/rpoN1) [Hydrogenophaga crassostreae strain LPB0072]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLDREEERAEREEFGLDQGDAQVSASEQIAEVASV
AETDVDLTPQEGLQPSLTSSASNDSGSAETLESRIDGEAKLEESWDGDGSVEMAPDDGEWGGDAPARNNNSTGGDDDTAT
AAELAQCPVSLQDHLHEQARCLRLSETDQAALYFLIESLNDDGYLVDDWTELALAFWRLLHGRDALSPGIEAIEQAEEQL
RTAIGWLHNMEPTGVGARDLGECLRLQIEELRNSPEARAALVICGQPLELIAKRDVKRLCAQCGLDDQTVRAALGLIAGL
EPKPGRQFVDVERNVVVPDVIVTHAGRGFKVHLNAEVMPRLRVHDVYANAMRQNRGGKDGGGAAGHAAMQQRLQEARWFI
KNIQQRFDTILRVSTAIVERQRNFFTHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSSLGTE
AGGNASSTAVRALLKQLIAAEEPKKPLSDNQLSDLLKEQGIECARRTVAKYREALRIAPANLRKTL

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=198612 LPB072_RS21660 WP_066095961.1 4668858..4670498(-) (rpoN/rpoN1) [Hydrogenophaga crassostreae strain LPB0072]
GTGAAGCAAGGCCTGTCGCTGCGCGTCTCACAGCATCTGGCCTTGACGCCTCAGCTGCAGCAATCGATCCGTCTGCTGCA
GCTCTCTACCCTTGAGATGGCGCAGGAAGTTGAGCAAATGCTCGACGAGAACCCATTTCTTGATCGTGAAGAAGAGCGCG
CTGAGCGCGAAGAATTTGGCCTCGATCAAGGGGATGCTCAGGTCAGTGCCTCAGAGCAGATTGCCGAAGTCGCCTCGGTG
GCGGAGACCGATGTTGACCTGACGCCGCAAGAAGGCTTGCAACCCAGCCTGACAAGCAGTGCCAGCAACGACTCGGGCAG
CGCCGAAACGCTGGAGAGCCGGATCGATGGTGAAGCCAAGCTGGAAGAGAGTTGGGATGGTGATGGCTCGGTTGAGATGG
CGCCCGATGATGGCGAATGGGGCGGTGACGCACCTGCACGCAACAACAACAGCACAGGTGGCGACGATGACACCGCGACC
GCAGCCGAACTGGCTCAGTGCCCGGTCAGCCTGCAGGACCATTTGCACGAACAGGCGCGGTGCCTGCGGTTGAGTGAGAC
CGATCAGGCTGCGCTCTATTTCCTGATCGAATCGCTGAACGACGATGGCTATCTGGTCGACGACTGGACCGAACTGGCTT
TGGCTTTTTGGCGCTTGCTGCATGGGCGTGATGCTCTTTCACCAGGCATAGAGGCCATTGAACAAGCCGAGGAGCAATTG
CGCACGGCGATAGGCTGGCTGCACAACATGGAGCCCACGGGTGTCGGTGCACGGGATCTGGGCGAATGTTTGCGCCTGCA
GATCGAAGAGCTGCGCAACAGCCCGGAGGCGCGTGCCGCGCTTGTGATCTGCGGCCAGCCGCTGGAACTGATTGCCAAAC
GCGATGTGAAGCGCCTGTGTGCCCAGTGTGGGCTTGACGATCAAACCGTTCGCGCAGCCCTCGGCTTGATTGCCGGTCTG
GAGCCCAAGCCGGGTCGGCAGTTTGTCGATGTGGAGCGCAATGTGGTGGTGCCCGACGTGATCGTGACGCATGCAGGTCG
CGGCTTCAAGGTGCACCTCAATGCCGAGGTGATGCCACGCTTGCGCGTCCACGATGTGTATGCCAACGCCATGCGTCAAA
ACCGGGGCGGCAAAGACGGTGGTGGTGCGGCGGGCCACGCGGCCATGCAGCAGCGCTTGCAAGAAGCGCGCTGGTTCATC
AAGAATATCCAGCAGCGGTTTGACACCATCCTGCGCGTCTCGACGGCCATTGTGGAGCGTCAACGCAACTTCTTCACCCA
TGGCGAACTGGCCATGCGGCCGCTGGTTTTGCGCGAGATTGCAGATGAACTGGGCTTGCATGAGTCGACCATCAGCCGCG
TGACCACCGCCAAATACATGGCCACGCCATTTGGAACCTTCGAGCTCAAGTATTTTTTCGGTTCGTCGCTGGGCACCGAG
GCGGGCGGCAATGCGTCGAGCACGGCCGTTCGGGCCCTGCTCAAGCAGCTCATCGCGGCAGAAGAGCCGAAGAAGCCGTT
GTCAGACAACCAGCTGTCTGACCTGCTGAAAGAACAGGGTATTGAATGCGCTCGCCGCACTGTGGCCAAATACCGGGAAG
CCTTGCGCATTGCGCCGGCCAATTTGCGGAAGACCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(388-544)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(163-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A163C5D7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50

100

0.5

Multiple sequence alignment