Detailed information NTG0198591

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AM434_RS12470
• Genome accession: NZ_CP021935
• Coordinates: 2454215..2455240 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain AR_0055
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2449215..2460240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM434_RS12440 (AM434_12445)	zapB	2449299..2449544 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AM434_RS12445 (AM434_12450)	rraA	2449629..2450114 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AM434_RS12450 (AM434_12455)	menA	2450207..2451133 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AM434_RS12455 (AM434_12460)	hslU	2451200..2452531 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
AM434_RS12460 (AM434_12465)	hslV	2452541..2453071 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AM434_RS12465 (AM434_12470)	ftsN	2453164..2454123 (-)	960	WP_000068834.1	cell division protein FtsN	-
AM434_RS12470 (AM434_12475)	cytR	2454215..2455240 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
AM434_RS12475 (AM434_12480)	priA	2455396..2457594 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
AM434_RS12480 (AM434_12485)	rpmE	2457797..2458009 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AM434_RS12485 (AM434_12490)	yiiX	2458070..2458678 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
AM434_RS12490 (AM434_12495)	metJ	2458738..2459055 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=198591 AM434_RS12470 WP_000644908.1 2454215..2455240(-) (cytR) [Escherichia coli strain AR_0055]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=198591 AM434_RS12470 WP_000644908.1 2454215..2455240(-) (cytR) [Escherichia coli strain AR_0055]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625