Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GRI03_RS09010 Genome accession   NZ_CP017475
Coordinates   1733960..1734586 (+) Length   208 a.a.
NCBI ID   WP_095907632.1    Uniprot ID   -
Organism   Enterobacter cloacae strain M12X01451     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728960..1739586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI03_RS08990 (BJM06_01616) - 1729360..1731120 (-) 1761 WP_038985584.1 AAA family ATPase -
  GRI03_RS08995 (BJM06_01617) matP 1731307..1731759 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  GRI03_RS09000 (BJM06_01618) ompA 1731823..1732878 (-) 1056 WP_044158562.1 porin OmpA -
  GRI03_RS09005 (BJM06_01619) sulA 1733233..1733742 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  GRI03_RS09010 (BJM06_01620) sxy/tfoX 1733960..1734586 (+) 627 WP_095907632.1 TfoX/Sxy family DNA transformation protein Regulator
  GRI03_RS09015 (BJM06_01621) yccS 1734543..1736705 (-) 2163 WP_095907633.1 YccS family putative transporter -
  GRI03_RS09020 (BJM06_01622) - 1736725..1737171 (-) 447 WP_013097253.1 YccF domain-containing protein -
  GRI03_RS09025 (BJM06_01623) helD 1737294..1739348 (+) 2055 WP_095907634.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.52 Da        Isoelectric Point: 9.2254

>NTDB_id=198580 GRI03_RS09010 WP_095907632.1 1733960..1734586(+) (sxy/tfoX) [Enterobacter cloacae strain M12X01451]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAETRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=198580 GRI03_RS09010 WP_095907632.1 1733960..1734586(+) (sxy/tfoX) [Enterobacter cloacae strain M12X01451]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATCCAGCGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAC
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment