Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GRI03_RS02425 Genome accession   NZ_CP017475
Coordinates   324842..325366 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae strain M12X01451     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 319842..330366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI03_RS02405 (BJM06_00299) aphA 320166..320879 (+) 714 WP_013095066.1 acid phosphatase AphA -
  GRI03_RS02410 (BJM06_00300) - 320992..321408 (+) 417 WP_013095067.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GRI03_RS02415 (BJM06_00301) - 321411..321764 (+) 354 WP_013095068.1 MmcQ/YjbR family DNA-binding protein -
  GRI03_RS02420 (BJM06_00302) uvrA 321768..324590 (-) 2823 WP_095907238.1 excinuclease ABC subunit UvrA -
  GRI03_RS02425 (BJM06_00303) ssb 324842..325366 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GRI03_RS02430 (BJM06_00304) - 325467..326102 (+) 636 WP_095907239.1 hypothetical protein -
  GRI03_RS02435 (BJM06_00305) - 326164..326445 (-) 282 WP_008503385.1 YjcB family protein -
  GRI03_RS02440 (BJM06_00306) - 327003..328568 (+) 1566 WP_095907240.1 EAL domain-containing protein -
  GRI03_RS02445 (BJM06_00307) soxS 328575..328901 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  GRI03_RS02450 (BJM06_00308) soxR 328999..329457 (+) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=198577 GRI03_RS02425 WP_003860284.1 324842..325366(+) (ssb) [Enterobacter cloacae strain M12X01451]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=198577 GRI03_RS02425 WP_003860284.1 324842..325366(+) (ssb) [Enterobacter cloacae strain M12X01451]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAGTACACCACTGAAGTGGTGGTAAACGTTGG
TGGCACCATGCAGATGCTGGGAGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGTGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCACCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment