Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM434_RS06955 Genome accession   NZ_CP021935
Coordinates   1375971..1376447 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1370971..1381447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM434_RS06925 (AM434_06945) - 1372526..1373653 (+) 1128 Protein_1285 hypothetical protein -
  AM434_RS06930 (AM434_06950) - 1373729..1374184 (+) 456 WP_000581502.1 IrmA family protein -
  AM434_RS06935 (AM434_06955) - 1374263..1374496 (+) 234 WP_000902034.1 DUF905 family protein -
  AM434_RS06945 (AM434_06965) - 1374597..1375415 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  AM434_RS06950 (AM434_06970) - 1375470..1375955 (+) 486 WP_000849565.1 antirestriction protein -
  AM434_RS06955 (AM434_06975) radC 1375971..1376447 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  AM434_RS06960 (AM434_06980) - 1376510..1376731 (+) 222 WP_000692329.1 DUF987 domain-containing protein -
  AM434_RS06965 (AM434_06985) - 1376750..1377394 (+) 645 WP_000094916.1 hypothetical protein -
  AM434_RS06970 (AM434_06990) - 1377444..1377812 (+) 369 WP_001305076.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM434_RS06975 (AM434_06995) - 1377901..1378278 (+) 378 WP_000854690.1 TA system toxin CbtA family protein -
  AM434_RS06980 (AM434_07000) - 1378275..1378763 (+) 489 WP_000761699.1 DUF5983 family protein -
  AM434_RS06985 (AM434_07005) - 1378780..1378977 (+) 198 WP_000839293.1 DUF957 domain-containing protein -
  AM434_RS06990 (AM434_07010) - 1379062..1379907 (+) 846 WP_001529401.1 DUF4942 domain-containing protein -
  AM434_RS06995 (AM434_07015) - 1379976..1380371 (+) 396 WP_000208382.1 DUF6088 family protein -
  AM434_RS07000 (AM434_07020) - 1380364..1381257 (+) 894 WP_088251337.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=198560 AM434_RS06955 WP_001186726.1 1375971..1376447(+) (radC) [Escherichia coli strain AR_0055]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=198560 AM434_RS06955 WP_001186726.1 1375971..1376447(+) (radC) [Escherichia coli strain AR_0055]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392