Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BJG87_RS11125 Genome accession   NZ_CP017463
Coordinates   2259477..2260841 (-) Length   454 a.a.
NCBI ID   WP_017638462.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain JS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2254477..2265841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG87_RS11110 (BJG87_10915) cysE 2255643..2256272 (-) 630 WP_176745279.1 serine O-acetyltransferase -
  BJG87_RS11115 (BJG87_10920) gltX 2256638..2258092 (-) 1455 WP_017638460.1 glutamate--tRNA ligase -
  BJG87_RS11120 (BJG87_10925) - 2258377..2259450 (-) 1074 WP_017638461.1 PIN/TRAM domain-containing protein -
  BJG87_RS11125 (BJG87_10930) radA 2259477..2260841 (-) 1365 WP_017638462.1 DNA repair protein RadA Machinery gene
  BJG87_RS11130 (BJG87_10935) - 2261193..2263646 (-) 2454 WP_046466373.1 ATP-dependent Clp protease ATP-binding subunit -
  BJG87_RS11135 (BJG87_10940) - 2263662..2264666 (-) 1005 WP_037555779.1 protein arginine kinase -
  BJG87_RS11140 (BJG87_10945) - 2264659..2265213 (-) 555 WP_029056340.1 UvrB/UvrC motif-containing protein -
  BJG87_RS11145 (BJG87_10950) - 2265234..2265695 (-) 462 WP_046466372.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49838.33 Da        Isoelectric Point: 7.0049

>NTDB_id=198536 BJG87_RS11125 WP_017638462.1 2259477..2260841(-) (radA) [Staphylococcus pasteuri strain JS7]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKETAGKVQTLDSIKHESTPRVLTESKEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVK
DINPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVMNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEDIKVVGVSSVHDALKHAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=198536 BJG87_RS11125 WP_017638462.1 2259477..2260841(-) (radA) [Staphylococcus pasteuri strain JS7]
TTGGCCAAGAAAAAAATAATATTTGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGGAAATGCCCTAACTG
TGGTGCATGGAACCAAATGGAAGAAATAGTTGAAAAAGCCGCCAATCCAAAACATGGTGTTAAATCCAAAGAAACTGCAG
GAAAAGTACAAACACTAGACAGTATTAAACATGAATCTACACCACGAGTGCTCACAGAATCAAAAGAGTTTAACCGTGTA
CTTGGTGGAGGCATTGTAAATGGATCTCTTGTCTTAATAGGCGGTGACCCAGGTATTGGGAAGTCAACATTACTTTTACA
AATTTGTGCTTCTCTCTCTCAATCTAAAAATGTTTTATACATTACAGGTGAGGAATCAATTAATCAAACAAAACTTCGTG
CAGATCGCTTAGAAGAAGACTCAAGCAAGTTACAAGTGTTGGCTGAAACAGATCTAGAAGTAATCTATCAGACAGTTAAA
GATATTAATCCAGATTTATTAGTCGTTGACTCAATACAAACAATTTATCACCCAGAAATTAGTTCCGCACCTGGTTCTGT
CTCTCAAGTAAGAGAGAGTACACAAAGCTTAATGAATATCGCTAAACAAATGAATATCGCGACATTTATTGTTGGTCATG
TTACTAAAGAGGGGCAAATAGCTGGACCTAGATTACTCGAACACATGGTTGATACAGTGCTTTATTTCGAAGGTGATGAA
CACCATGCCTATAGAATATTAAGAGCCGTTAAAAACCGTTTTGGTTCAACGAATGAGATGGGTATTTTTGAAATGAAACA
AAGCGGGTTAAAAGGAGTTATGAATCCTTCCGAAATGTTTTTAGAAGAACGTTCTACTAATGTTCCAGGGTCAACAATAG
TATCGACTATGGAAGGAACAAGACCTTTACTAATTGAAGTTCAGGCTTTAGTAACGCCTACAACATTCAACAACCCACGT
CGAATGGCTACAGGCATTGACCACAATCGCTTGAGCTTATTAATGGCAGTGTTAGAGAAAAAAGAAAATTATCTACTACA
GCAACAAGATGCATATATTAAAGTAGCTGGAGGAGTGAAATTAACTGAACCAGCAGTTGATCTTAGTATTATAGTTGCTA
CTGCATCTAGTTTTAAAGATAAAGCAGTAGACGGCTTAGATTGTTTTATTGGCGAAGTTGGTTTGACTGGTGAAGTAAGA
CGAGTAGCAAGAATTGAACAGCGTGTTCAAGAAGCTGCAAAATTAGGGTTTAAAAGGGTGATTATTCCACAAACTAATAT
TGGTGGTTGGACATTCCCTGAAGATATTAAAGTTGTCGGTGTATCATCAGTTCATGACGCATTAAAGCATGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(70-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.67
  radA Streptococcus pneumoniae Rx1

59.956

99.559

0.597
  radA Streptococcus pneumoniae D39

59.956

99.559

0.597
  radA Streptococcus pneumoniae R6

59.956

99.559

0.597
  radA Streptococcus pneumoniae TIGR4

59.956

99.559

0.597
  radA Streptococcus mitis NCTC 12261

59.956

99.559

0.597
  radA Streptococcus mitis SK321

59.956

99.559

0.597

Multiple sequence alignment