Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   S101392_RS20635 Genome accession   NZ_CP021921
Coordinates   4012192..4012881 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4007192..4017881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS20615 (S101392_04079) yxeA 4008097..4008444 (-) 348 WP_024572303.1 YxeA family protein -
  S101392_RS20620 (S101392_04080) yxdM 4008458..4010326 (-) 1869 WP_088327322.1 ABC transporter permease YxdM -
  S101392_RS20625 (S101392_04081) yxdL 4010301..4011074 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  S101392_RS20630 (S101392_04082) yxdK 4011218..4012195 (-) 978 WP_088327324.1 two-component system sensor histidine kinase YxdK -
  S101392_RS20635 (S101392_04083) braR 4012192..4012881 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  S101392_RS20640 (S101392_04084) iolJ 4012989..4013861 (-) 873 WP_088327326.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  S101392_RS20645 (S101392_04085) iolI 4013882..4014718 (-) 837 WP_080529990.1 2-keto-myo-inositol isomerase -
  S101392_RS20650 (S101392_04086) iolH 4014804..4015673 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  S101392_RS20655 (S101392_04087) iolG 4015693..4016727 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=198529 S101392_RS20635 WP_003243527.1 4012192..4012881(-) (braR) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=198529 S101392_RS20635 WP_003243527.1 4012192..4012881(-) (braR) [Bacillus subtilis subsp. subtilis strain SRCM101392]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCCGCATATGACGGATATTATTGGTGCCGGCAAATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406