Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   BJG87_RS04095 Genome accession   NZ_CP017463
Coordinates   851996..852712 (-) Length   238 a.a.
NCBI ID   WP_017638099.1    Uniprot ID   A0A654BEB4
Organism   Staphylococcus pasteuri strain JS7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 846996..857712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG87_RS04080 (BJG87_04020) - 848415..849365 (+) 951 WP_046467596.1 LacI family DNA-binding transcriptional regulator -
  BJG87_RS04085 (BJG87_04025) - 849485..850969 (+) 1485 WP_046467595.1 sucrose-6-phosphate hydrolase -
  BJG87_RS04090 (BJG87_04030) - 850966..851925 (+) 960 WP_046467594.1 carbohydrate kinase family protein -
  BJG87_RS04095 (BJG87_04035) agrA 851996..852712 (-) 717 WP_017638099.1 quorum-sensing response regulator AgrA Regulator
  BJG87_RS04100 (BJG87_04040) agrC 852725..854014 (-) 1290 WP_046467593.1 quorum-sensing sensor histidine kinase AgrC -
  BJG87_RS04105 (BJG87_04045) agrD 854039..854179 (-) 141 WP_046467592.1 cyclic lactone autoinducer peptide AgrD -
  BJG87_RS04110 (BJG87_04050) - 854184..854747 (-) 564 WP_046467591.1 accessory gene regulator AgrB -
  BJG87_RS12990 - 855064..855141 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  BJG87_RS04115 - 855206..855283 (+) 78 WP_072291871.1 delta-lysin family phenol-soluble modulin -
  BJG87_RS04120 (BJG87_04055) - 855681..856466 (-) 786 WP_046467590.1 carbon-nitrogen family hydrolase -
  BJG87_RS04125 (BJG87_04060) - 856581..857207 (-) 627 WP_017638094.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27928.93 Da        Isoelectric Point: 5.6599

>NTDB_id=198513 BJG87_RS04095 WP_017638099.1 851996..852712(-) (agrA) [Staphylococcus pasteuri strain JS7]
MKIFICEDDPKQRENMTSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=198513 BJG87_RS04095 WP_017638099.1 851996..852712(-) (agrA) [Staphylococcus pasteuri strain JS7]
ATGAAAATTTTCATTTGCGAAGATGATCCAAAACAAAGAGAGAATATGACTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAACCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATCG
GTTGTTATTTCTTAGATATCCAACTCGAAGCAGATATTAATGGCATTAAATTAGGTAGTGAAATTCGCAAACATGACCCT
GTTGGTAATATTATATTTGTTACAAGTCATAGCGAACTAACATACCTCACCTTTGTATACAAAGTGGCAGCGATGGATTT
CATATTTAAAGATGACCCAGCAGAACTGAAAACGCGAATTATTGATTGTTTAGAAACCGCTCACACAAGACTTAAGTTAT
TATCAAAAGAAAGTAATGTTGAAACAATCGAATTAAAACGTGGAAGTAATTCAGTGTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACATCGTTTAATCGCCCATTTAGATAATAGACAAATCGAATTTTATGGTAATCTTAA
AGAATTAAGTCAATTAGATGACCGCTTCTTTAGATGCCACAATAGTTTTGTAGTTAATCGAAGAAACATAGAATCGATTG
ATTCAAAAGAACGTATTGTCTATTTCAAAAACAAAGAACATTGTTATGCATCTGTTCGTAATGTTAAAAAAATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654BEB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937

Multiple sequence alignment