Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BJD96_RS06710 | Genome accession | NZ_CP017460 |
| Coordinates | 1414592..1415566 (+) | Length | 324 a.a. |
| NCBI ID | WP_096809505.1 | Uniprot ID | - |
| Organism | Staphylococcus nepalensis strain JS1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1409592..1420566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJD96_RS06675 (BJD96_06590) | rpmG | 1409807..1409956 (+) | 150 | WP_019469354.1 | 50S ribosomal protein L33 | - |
| BJD96_RS06680 (BJD96_06595) | - | 1410100..1410642 (+) | 543 | WP_096809492.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| BJD96_RS06685 (BJD96_06600) | - | 1410654..1412102 (+) | 1449 | WP_096809494.1 | rhomboid family intramembrane serine protease | - |
| BJD96_RS06690 (BJD96_06605) | - | 1412089..1412295 (+) | 207 | WP_096809496.1 | YqgQ family protein | - |
| BJD96_RS06695 (BJD96_06610) | - | 1412595..1413581 (+) | 987 | WP_096809499.1 | glucokinase | - |
| BJD96_RS06700 (BJD96_06615) | - | 1413581..1413907 (+) | 327 | WP_096809501.1 | MTH1187 family thiamine-binding protein | - |
| BJD96_RS06705 (BJD96_06620) | - | 1413907..1414530 (+) | 624 | WP_096809503.1 | MBL fold metallo-hydrolase | - |
| BJD96_RS06710 (BJD96_06625) | comGA | 1414592..1415566 (+) | 975 | WP_096809505.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BJD96_RS06715 (BJD96_06630) | comGB | 1415538..1416605 (+) | 1068 | WP_229719007.1 | competence type IV pilus assembly protein ComGB | - |
| BJD96_RS06720 (BJD96_06635) | comGC | 1416626..1416943 (+) | 318 | WP_096809507.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BJD96_RS06725 (BJD96_06640) | - | 1416978..1417373 (+) | 396 | WP_229719008.1 | competence protein | - |
| BJD96_RS06730 (BJD96_06645) | - | 1417354..1417647 (+) | 294 | WP_096809511.1 | hypothetical protein | - |
| BJD96_RS06735 (BJD96_06650) | - | 1417625..1418068 (+) | 444 | WP_096809514.1 | competence type IV pilus minor pilin ComGF | - |
| BJD96_RS06745 (BJD96_06660) | - | 1418246..1418740 (+) | 495 | WP_174221779.1 | shikimate kinase | - |
| BJD96_RS06750 (BJD96_06665) | gcvT | 1418917..1420008 (+) | 1092 | WP_096809520.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37182.42 Da Isoelectric Point: 9.5336
>NTDB_id=198489 BJD96_RS06710 WP_096809505.1 1414592..1415566(+) (comGA) [Staphylococcus nepalensis strain JS1]
MKLLFKNIFDKAIHENVTDVHFIPNQNKVKIKFRKKAFLVTVETIEINTYKKLLTYMKYQAGLDVSKHNAAQSGRYAYKL
KQLYYLRISTLPLSLGYESCVVRIIPQYFQKTAKIQSLNQLFKLMNKQQGLLLFSGPTGSGKSTLMYQMILHAKEQLNVN
IITVEDPVERLIEGITQVSINEKAGINYANSFKAILRCDPDIILIGEIKDATIAKQVIHASLSGHLVLSTIHSNNCKGAL
CRLLEMGISVQELRQTILSIINQRLIVTSKEERSLIYEQLTREDIQFYFENQLTLPNTFQNLSFKLHEMAKEGEICEETL
NRYI
MKLLFKNIFDKAIHENVTDVHFIPNQNKVKIKFRKKAFLVTVETIEINTYKKLLTYMKYQAGLDVSKHNAAQSGRYAYKL
KQLYYLRISTLPLSLGYESCVVRIIPQYFQKTAKIQSLNQLFKLMNKQQGLLLFSGPTGSGKSTLMYQMILHAKEQLNVN
IITVEDPVERLIEGITQVSINEKAGINYANSFKAILRCDPDIILIGEIKDATIAKQVIHASLSGHLVLSTIHSNNCKGAL
CRLLEMGISVQELRQTILSIINQRLIVTSKEERSLIYEQLTREDIQFYFENQLTLPNTFQNLSFKLHEMAKEGEICEETL
NRYI
Nucleotide
Download Length: 975 bp
>NTDB_id=198489 BJD96_RS06710 WP_096809505.1 1414592..1415566(+) (comGA) [Staphylococcus nepalensis strain JS1]
TTGAAGTTATTATTTAAAAATATTTTTGACAAGGCAATTCATGAAAATGTTACAGATGTACATTTTATACCAAACCAAAA
TAAAGTAAAAATTAAATTCAGAAAGAAAGCATTTTTAGTTACAGTAGAAACAATAGAAATCAACACTTATAAGAAATTAC
TTACCTATATGAAATATCAAGCAGGATTAGATGTTTCTAAACACAATGCTGCCCAAAGTGGTAGATATGCATATAAATTA
AAACAACTATATTATTTAAGAATTTCTACTTTGCCATTGTCTTTAGGTTATGAGAGTTGTGTAGTTAGGATTATTCCTCA
ATATTTTCAAAAAACAGCAAAAATTCAAAGTCTCAATCAATTATTCAAATTAATGAATAAACAACAAGGTTTACTACTAT
TTAGTGGTCCAACTGGATCAGGAAAAAGCACATTAATGTATCAAATGATTTTACACGCAAAAGAACAATTAAATGTGAAT
ATTATAACAGTTGAAGATCCTGTGGAACGATTAATTGAAGGTATTACACAAGTTTCTATCAATGAAAAGGCAGGTATTAA
TTATGCTAACTCCTTTAAAGCAATTTTAAGATGTGACCCAGATATTATTCTTATAGGAGAAATTAAAGATGCAACTATCG
CTAAACAGGTCATACATGCTAGTTTAAGTGGGCATTTAGTGCTTTCAACTATCCACTCTAATAACTGTAAAGGCGCATTA
TGCAGGTTATTAGAAATGGGGATAAGTGTTCAAGAACTACGTCAAACGATCTTAAGTATTATTAATCAACGACTTATCGT
TACATCAAAAGAAGAGCGTTCATTAATATATGAACAACTAACACGAGAAGATATACAATTTTATTTCGAAAACCAGCTTA
CGCTTCCAAACACATTTCAAAATTTATCTTTTAAATTACACGAAATGGCTAAAGAAGGAGAAATTTGTGAAGAAACACTT
AATAGATATATTTAG
TTGAAGTTATTATTTAAAAATATTTTTGACAAGGCAATTCATGAAAATGTTACAGATGTACATTTTATACCAAACCAAAA
TAAAGTAAAAATTAAATTCAGAAAGAAAGCATTTTTAGTTACAGTAGAAACAATAGAAATCAACACTTATAAGAAATTAC
TTACCTATATGAAATATCAAGCAGGATTAGATGTTTCTAAACACAATGCTGCCCAAAGTGGTAGATATGCATATAAATTA
AAACAACTATATTATTTAAGAATTTCTACTTTGCCATTGTCTTTAGGTTATGAGAGTTGTGTAGTTAGGATTATTCCTCA
ATATTTTCAAAAAACAGCAAAAATTCAAAGTCTCAATCAATTATTCAAATTAATGAATAAACAACAAGGTTTACTACTAT
TTAGTGGTCCAACTGGATCAGGAAAAAGCACATTAATGTATCAAATGATTTTACACGCAAAAGAACAATTAAATGTGAAT
ATTATAACAGTTGAAGATCCTGTGGAACGATTAATTGAAGGTATTACACAAGTTTCTATCAATGAAAAGGCAGGTATTAA
TTATGCTAACTCCTTTAAAGCAATTTTAAGATGTGACCCAGATATTATTCTTATAGGAGAAATTAAAGATGCAACTATCG
CTAAACAGGTCATACATGCTAGTTTAAGTGGGCATTTAGTGCTTTCAACTATCCACTCTAATAACTGTAAAGGCGCATTA
TGCAGGTTATTAGAAATGGGGATAAGTGTTCAAGAACTACGTCAAACGATCTTAAGTATTATTAATCAACGACTTATCGT
TACATCAAAAGAAGAGCGTTCATTAATATATGAACAACTAACACGAGAAGATATACAATTTTATTTCGAAAACCAGCTTA
CGCTTCCAAACACATTTCAAAATTTATCTTTTAAATTACACGAAATGGCTAAAGAAGGAGAAATTTGTGAAGAAACACTT
AATAGATATATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
59.568 |
100 |
0.596 |
| comGA | Staphylococcus aureus N315 |
59.568 |
100 |
0.596 |