Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BJG88_RS06850 | Genome accession | NZ_CP017459 |
| Coordinates | 1437300..1438274 (+) | Length | 324 a.a. |
| NCBI ID | WP_108909309.1 | Uniprot ID | - |
| Organism | Staphylococcus nepalensis strain JS9 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1432300..1443274
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJG88_RS06815 (BJG88_06715) | rpmG | 1432515..1432664 (+) | 150 | WP_019469354.1 | 50S ribosomal protein L33 | - |
| BJG88_RS06820 (BJG88_06720) | - | 1432808..1433350 (+) | 543 | WP_096809492.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| BJG88_RS06825 (BJG88_06725) | - | 1433362..1434810 (+) | 1449 | WP_096809494.1 | rhomboid family intramembrane serine protease | - |
| BJG88_RS06830 (BJG88_06730) | - | 1434797..1435003 (+) | 207 | WP_096809496.1 | YqgQ family protein | - |
| BJG88_RS06835 (BJG88_06735) | - | 1435303..1436289 (+) | 987 | WP_096809499.1 | glucokinase | - |
| BJG88_RS06840 (BJG88_06740) | - | 1436289..1436615 (+) | 327 | WP_096809501.1 | MTH1187 family thiamine-binding protein | - |
| BJG88_RS06845 (BJG88_06745) | - | 1436615..1437238 (+) | 624 | WP_096809503.1 | MBL fold metallo-hydrolase | - |
| BJG88_RS06850 (BJG88_06750) | comGA | 1437300..1438274 (+) | 975 | WP_108909309.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BJG88_RS06855 (BJG88_06755) | comGB | 1438246..1439313 (+) | 1068 | WP_229719007.1 | competence type IV pilus assembly protein ComGB | - |
| BJG88_RS06860 (BJG88_06760) | comGC | 1439334..1439651 (+) | 318 | WP_096809507.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BJG88_RS06865 (BJG88_06765) | comGD | 1439641..1440081 (+) | 441 | WP_096809509.1 | competence type IV pilus minor pilin ComGD | - |
| BJG88_RS06870 (BJG88_06770) | - | 1440062..1440355 (+) | 294 | WP_108909310.1 | hypothetical protein | - |
| BJG88_RS06875 (BJG88_06775) | - | 1440333..1440776 (+) | 444 | WP_096809514.1 | competence type IV pilus minor pilin ComGF | - |
| BJG88_RS06885 (BJG88_06785) | - | 1440954..1441448 (+) | 495 | WP_174221779.1 | shikimate kinase | - |
| BJG88_RS06890 (BJG88_06790) | gcvT | 1441625..1442716 (+) | 1092 | WP_096809520.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37210.44 Da Isoelectric Point: 9.5389
>NTDB_id=198454 BJG88_RS06850 WP_108909309.1 1437300..1438274(+) (comGA) [Staphylococcus nepalensis strain JS9]
MKLLFKNIFDKAIHENVTDVHFIPNQNKVKIKFRKKAFLVTVETIEINTYKKLLTYMKYQAGLDVSKHNAAQSGRYAYKL
KQLYYLRISTLPLSLGYESCVVRIIPQYFQKTAKIQSLNQLFKLMNKQQGLLLFSGPTGSGKSTLMYQMILHAKEQLNVN
IITVEDPVERLIEGITQVSINEKAGINYANSFKAILRCDPDIILIGEIRDATIAKQVIHASLSGHLVLSTIHSNNCKGAL
CRLLEMGISVQELRQTILSIINQRLIVTSKEERSLIYEQLTREDIQFYFENQLTLPNTFQNLSFKLHEMAKEGEICEETL
NRYI
MKLLFKNIFDKAIHENVTDVHFIPNQNKVKIKFRKKAFLVTVETIEINTYKKLLTYMKYQAGLDVSKHNAAQSGRYAYKL
KQLYYLRISTLPLSLGYESCVVRIIPQYFQKTAKIQSLNQLFKLMNKQQGLLLFSGPTGSGKSTLMYQMILHAKEQLNVN
IITVEDPVERLIEGITQVSINEKAGINYANSFKAILRCDPDIILIGEIRDATIAKQVIHASLSGHLVLSTIHSNNCKGAL
CRLLEMGISVQELRQTILSIINQRLIVTSKEERSLIYEQLTREDIQFYFENQLTLPNTFQNLSFKLHEMAKEGEICEETL
NRYI
Nucleotide
Download Length: 975 bp
>NTDB_id=198454 BJG88_RS06850 WP_108909309.1 1437300..1438274(+) (comGA) [Staphylococcus nepalensis strain JS9]
TTGAAGTTATTATTTAAAAATATTTTTGACAAGGCAATTCATGAAAATGTTACAGATGTACATTTTATACCAAACCAAAA
TAAAGTAAAAATTAAATTCAGAAAGAAAGCATTTTTAGTTACAGTAGAAACAATAGAAATCAACACTTATAAGAAATTAC
TTACCTATATGAAATATCAAGCAGGATTAGATGTTTCTAAACACAATGCTGCCCAAAGTGGTAGATATGCATATAAATTA
AAACAACTATATTATTTAAGAATTTCTACTTTGCCATTGTCTTTAGGTTATGAGAGTTGTGTAGTTAGGATTATTCCTCA
ATATTTTCAAAAAACAGCAAAAATTCAAAGTCTCAATCAATTATTCAAATTAATGAATAAACAACAAGGTTTACTACTAT
TTAGTGGTCCAACTGGATCAGGAAAAAGCACATTAATGTATCAAATGATTTTACACGCAAAAGAACAATTAAATGTGAAT
ATTATAACAGTTGAAGATCCTGTGGAACGATTAATTGAAGGTATTACACAAGTTTCTATCAATGAAAAGGCAGGTATTAA
TTATGCTAACTCCTTTAAAGCAATTTTAAGATGTGACCCAGATATTATTCTTATAGGAGAAATTAGAGATGCAACTATCG
CTAAACAGGTCATACATGCTAGTTTAAGTGGGCATTTAGTGCTTTCAACTATCCACTCTAATAACTGTAAAGGCGCATTA
TGCAGGTTATTAGAAATGGGGATAAGTGTTCAAGAACTACGTCAAACGATCTTAAGTATTATTAATCAACGACTTATCGT
TACATCAAAAGAAGAGCGTTCATTAATATATGAACAACTAACACGAGAAGATATACAATTTTATTTCGAAAACCAGCTTA
CGCTTCCAAACACATTTCAAAATTTATCTTTTAAATTACACGAAATGGCTAAAGAAGGAGAAATTTGTGAAGAAACACTT
AATAGATATATTTAG
TTGAAGTTATTATTTAAAAATATTTTTGACAAGGCAATTCATGAAAATGTTACAGATGTACATTTTATACCAAACCAAAA
TAAAGTAAAAATTAAATTCAGAAAGAAAGCATTTTTAGTTACAGTAGAAACAATAGAAATCAACACTTATAAGAAATTAC
TTACCTATATGAAATATCAAGCAGGATTAGATGTTTCTAAACACAATGCTGCCCAAAGTGGTAGATATGCATATAAATTA
AAACAACTATATTATTTAAGAATTTCTACTTTGCCATTGTCTTTAGGTTATGAGAGTTGTGTAGTTAGGATTATTCCTCA
ATATTTTCAAAAAACAGCAAAAATTCAAAGTCTCAATCAATTATTCAAATTAATGAATAAACAACAAGGTTTACTACTAT
TTAGTGGTCCAACTGGATCAGGAAAAAGCACATTAATGTATCAAATGATTTTACACGCAAAAGAACAATTAAATGTGAAT
ATTATAACAGTTGAAGATCCTGTGGAACGATTAATTGAAGGTATTACACAAGTTTCTATCAATGAAAAGGCAGGTATTAA
TTATGCTAACTCCTTTAAAGCAATTTTAAGATGTGACCCAGATATTATTCTTATAGGAGAAATTAGAGATGCAACTATCG
CTAAACAGGTCATACATGCTAGTTTAAGTGGGCATTTAGTGCTTTCAACTATCCACTCTAATAACTGTAAAGGCGCATTA
TGCAGGTTATTAGAAATGGGGATAAGTGTTCAAGAACTACGTCAAACGATCTTAAGTATTATTAATCAACGACTTATCGT
TACATCAAAAGAAGAGCGTTCATTAATATATGAACAACTAACACGAGAAGATATACAATTTTATTTCGAAAACCAGCTTA
CGCTTCCAAACACATTTCAAAATTTATCTTTTAAATTACACGAAATGGCTAAAGAAGGAGAAATTTGTGAAGAAACACTT
AATAGATATATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
59.877 |
100 |
0.599 |
| comGA | Staphylococcus aureus N315 |
59.877 |
100 |
0.599 |