Detailed information NTG0198437

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: BJG88_RS00200
• Genome accession: NZ_CP017459
• Coordinates: 46292..47917 (-)
• Length: 541 a.a.
• NCBI ID: WP_108909054.1
• Uniprot ID: -
• Organism: Staphylococcus nepalensis strain JS9
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	46765..47917	46292..47917	within	0

Gene organization within MGE regions

Location: 46292..47917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJG88_RS00200 (BJG88_00195)	ccrB	46292..47917 (-)	1626	WP_108909054.1	cassette chromosome recombinase CcrB	Machinery gene

Sequence

Protein

• Length: 541 a.a.
• Molecular weight: 62213.09 Da
• Isoelectric Point: 9.8219

>NTDB_id=198437 BJG88_RS00200 WP_108909054.1 46292..47917(-) (ccrB) [Staphylococcus nepalensis strain JS9]
MNEMKKKRIGAYIRVSTERQVEGYSVDGQITQIEQFCQFNGYDLVDIYADRGISGKSMNRPALQRMLQDAKNGKLDCVIV
YKINRLARNTSNLLTIVEELHRQNVEFFSLSERMEVKNSTGKLLLNILASFSEFERNTILDNIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKELIINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMSASNTTNTLKNG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSNKVLKQVVERVNQENQVDVAALNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFFPQTLFLQI

Nucleotide

• Length: 1626 bp

>NTDB_id=198437 BJG88_RS00200 WP_108909054.1 46292..47917(-) (ccrB) [Staphylococcus nepalensis strain JS9]
ATGAATGAAATGAAGAAGAAAAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTGGAAGGTTATAGTGTAGA
TGGGCAAATTACACAAATAGAGCAATTTTGCCAATTTAATGGTTATGACCTCGTTGATATATACGCAGATCGAGGTATTT
CTGGAAAATCTATGAACCGCCCTGCACTACAGCGCATGTTACAAGACGCAAAAAATGGAAAGTTAGACTGTGTGATTGTT
TATAAAATAAATCGTTTAGCACGTAATACTTCCAACCTACTAACAATAGTCGAAGAACTACATCGCCAAAATGTTGAATT
TTTTAGCCTGTCTGAACGCATGGAAGTCAAAAATTCGACCGGCAAACTATTATTAAATATACTTGCAAGTTTCTCCGAAT
TTGAAAGAAATACAATTTTAGATAATATTTACACCGGCCAACATCAAAGAGCTTTAGAGGGCTATTATCAAGGAAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATTATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCTAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGATTAAATGATAAGCCAGTAATCGCCGAAGGCAAACACACCCCTATTATTAG
CCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTTCATGGTAAAGGAACCAATA
TTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGTCTGCGAGTAACACCACAAACACACTTAAAAATGGA
ACAAAGAAGCGCATTCGCTACTATTCTTGTAGTAATTTTCGTAACAAAGGTTCAAAAGTGTGTTCTGCCAATAGTGTTAG
AGCTGATGTAATAGAAAAATATGTTATGGACCAAATACTTGAAATAGTCAAAAGTAATAAAGTTCTCAAACAAGTTGTCG
AACGTGTTAACCAAGAAAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCATCTT
ATGATACTAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAGGCA
TTATACCTTACGGTCATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTTC
CTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (11-154)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-355)

• Recombinase (Recombinase) (179-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	77.306	100	0.774