Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   S101392_RS02535 Genome accession   NZ_CP021921
Coordinates   486578..487012 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 481578..492012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS02505 (S101392_00494) ydaD 482227..483087 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  S101392_RS02510 (S101392_00495) lyxE 483103..483606 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  S101392_RS02515 (S101392_00496) ydaF 483693..484244 (+) 552 WP_088325317.1 GNAT family protein -
  S101392_RS02520 (S101392_00497) ydaG 484322..484744 (+) 423 WP_015252796.1 pyridoxamine 5'-phosphate oxidase family protein -
  S101392_RS02525 (S101392_00498) amj 485250..486059 (+) 810 WP_088325318.1 lipid II flippase Amj -
  S101392_RS02530 (S101392_00499) ydzA 486103..486393 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  S101392_RS02535 (S101392_00500) lrpC 486578..487012 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  S101392_RS02540 (S101392_00501) topB 487077..489260 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  S101392_RS02545 (S101392_00502) ephJ 489463..490551 (+) 1089 WP_088325319.1 lipoprotein YdaJ -
  S101392_RS02550 (S101392_00503) epsK 490532..491383 (+) 852 WP_088325320.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=198409 S101392_RS02535 WP_003246585.1 486578..487012(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=198409 S101392_RS02535 WP_003246585.1 486578..487012(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment