Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   BIZ51_RS05145 Genome accession   NZ_CP017458
Coordinates   1131642..1132226 (+) Length   194 a.a.
NCBI ID   WP_027227635.1    Uniprot ID   A0A2S6F1Z5
Organism   Legionella pneumophila subsp. fraseri strain Dallas 1E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1126642..1137226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ51_RS05125 (BIZ51_05050) ravI 1127990..1128997 (-) 1008 WP_027227632.1 Dot/Icm T4SS effector RavI -
  BIZ51_RS05130 (BIZ51_05055) pilM 1129416..1130480 (+) 1065 WP_027227633.1 type IV pilus assembly protein PilM Machinery gene
  BIZ51_RS05135 (BIZ51_05060) pilN 1130484..1131032 (+) 549 WP_027227634.1 PilN domain-containing protein Machinery gene
  BIZ51_RS05140 (BIZ51_05065) pilO 1131046..1131645 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  BIZ51_RS05145 (BIZ51_05070) pilP 1131642..1132226 (+) 585 WP_027227635.1 pilus assembly protein PilP Machinery gene
  BIZ51_RS05150 (BIZ51_05075) pilQ 1132230..1134326 (+) 2097 WP_027227636.1 type IV pilus secretin PilQ Machinery gene
  BIZ51_RS05155 (BIZ51_05080) aroK 1134772..1135299 (+) 528 WP_010946667.1 shikimate kinase AroK -
  BIZ51_RS05160 (BIZ51_05085) aroB 1135286..1136389 (+) 1104 WP_027227637.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 194 a.a.        Molecular weight: 22209.64 Da        Isoelectric Point: 10.3063

>NTDB_id=198402 BIZ51_RS05145 WP_027227635.1 1131642..1132226(+) (pilP) [Legionella pneumophila subsp. fraseri strain Dallas 1E]
MTIKYNQIPILDFFGNSLRTSFTAANFRKSLLTGLLVLLLSSCSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRIV
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=198402 BIZ51_RS05145 WP_027227635.1 1131642..1132226(+) (pilP) [Legionella pneumophila subsp. fraseri strain Dallas 1E]
ATGACAATTAAATACAACCAAATTCCTATATTAGATTTTTTCGGAAATTCTTTGCGCACTTCATTCACCGCAGCGAATTT
CCGAAAAAGTCTATTGACGGGGTTATTAGTTCTATTACTTAGCTCCTGCTCTGGTGATAACAGTGATCTTGTTAAGTACA
TCAATGAGGTGAAATCAAGGCCAGGAAGACCTATTGAGCCTATTCCCAAATTTGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAACAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCCGATAAAAAGAG
GCCGAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTCGTAGGTACTTTAAAAAAGGACAACGAAATTTGGG
CTCTGATTAAGCAACCTGATGGACAGATTAGCCGTGTGAGGGTTGGAGATTATATGGGACAAAATTATGGACGTATTGTT
TTGATTAAAAATGATCTCATTAAACTGGAAGAAACGGTACAAAAATCAGGGACATGGGAAAAACAGTCCACCACAATTAA
TTTGGACACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(49-188)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2S6F1Z5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

92.268

100

0.923


Multiple sequence alignment