Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | BIZ52_RS03490 | Genome accession | NZ_CP017457 |
| Coordinates | 727032..727739 (-) | Length | 235 a.a. |
| NCBI ID | WP_014843471.1 | Uniprot ID | - |
| Organism | Legionella pneumophila subsp. fraseri strain Detroit-1 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 722032..732739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BIZ52_RS03475 (BIZ52_03405) | - | 724908..725420 (-) | 513 | WP_014843468.1 | pilus assembly protein | - |
| BIZ52_RS03480 (BIZ52_03410) | - | 725417..726484 (-) | 1068 | WP_014843469.1 | PilW family protein | - |
| BIZ52_RS03485 (BIZ52_03415) | pilV | 726481..727020 (-) | 540 | WP_014843470.1 | type IV pilus modification protein PilV | - |
| BIZ52_RS03490 (BIZ52_03420) | fimT | 727032..727739 (-) | 708 | WP_014843471.1 | GspH/FimT family pseudopilin | Machinery gene |
| BIZ52_RS03495 (BIZ52_03425) | - | 727959..728819 (-) | 861 | WP_027224587.1 | polysaccharide deacetylase family protein | - |
| BIZ52_RS03500 (BIZ52_03430) | - | 728996..730345 (-) | 1350 | WP_080031323.1 | lpg0634 family Dot/Icm T4SS effector | - |
| BIZ52_RS03505 (BIZ52_03435) | - | 730633..732114 (+) | 1482 | WP_014843474.1 | glycosyltransferase family 39 protein | - |
Sequence
Protein
Download Length: 235 a.a. Molecular weight: 24934.66 Da Isoelectric Point: 8.2443
>NTDB_id=198355 BIZ52_RS03490 WP_014843471.1 727032..727739(-) (fimT) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MNKVITESQKLTLRNLANMLFCVESSVLPTKSNIAQKIQTKGIMYNNLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGTNWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGSTPGQAVWNNGALNCP
MNKVITESQKLTLRNLANMLFCVESSVLPTKSNIAQKIQTKGIMYNNLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGTNWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGSTPGQAVWNNGALNCP
Nucleotide
Download Length: 708 bp
>NTDB_id=198355 BIZ52_RS03490 WP_014843471.1 727032..727739(-) (fimT) [Legionella pneumophila subsp. fraseri strain Detroit-1]
TTGAACAAAGTGATAACGGAATCACAAAAGCTCACTCTACGCAACTTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCTACTAAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATAATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCTATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAACCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACCTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACCG
GATTTGTCCAATCCGGATCAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA
TTGAACAAAGTGATAACGGAATCACAAAAGCTCACTCTACGCAACTTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCTACTAAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATAATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCTATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAACCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACCTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACCG
GATTTGTCCAATCCGGATCAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Legionella pneumophila strain Lp02 |
95.745 |
100 |
0.957 |