Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CJJRM3420_RS07365 Genome accession   NZ_CP017456
Coordinates   1430005..1431186 (-) Length   393 a.a.
NCBI ID   WP_002855848.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni str. RM3420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425005..1436186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM3420_RS07335 (CjjRM3420_1456) - 1425550..1425891 (+) 342 WP_002855749.1 hypothetical protein -
  CJJRM3420_RS07340 (CjjRM3420_1457) flgM 1425954..1426151 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJJRM3420_RS07345 (CjjRM3420_1458) - 1426193..1426627 (+) 435 WP_002856482.1 flagellar protein FlgN -
  CJJRM3420_RS07350 (CjjRM3420_1459) flgK 1426637..1428463 (+) 1827 WP_002856644.1 flagellar hook-associated protein FlgK -
  CJJRM3420_RS07355 (CjjRM3420_1460) - 1428480..1429244 (+) 765 WP_002890500.1 TIGR02757 family protein -
  CJJRM3420_RS07360 (CjjRM3420_1461) - 1429248..1430012 (+) 765 WP_002855821.1 TSUP family transporter -
  CJJRM3420_RS07365 (CjjRM3420_1462) ctsF 1430005..1431186 (-) 1182 WP_002855848.1 type II secretion system F family protein Machinery gene
  CJJRM3420_RS07370 (CjjRM3420_1463) ctsE 1431183..1432741 (-) 1559 Protein_1432 GspE/PulE family protein -
  CJJRM3420_RS07375 (CjjRM3420_1464) ctsX 1432731..1433318 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJJRM3420_RS07380 (CjjRM3420_1465) ctsP 1433322..1433930 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJJRM3420_RS07385 (CjjRM3420_1466) ctsD 1433923..1435335 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJJRM3420_RS07390 (CjjRM3420_1467) ctsR 1435313..1435624 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45776.41 Da        Isoelectric Point: 9.2542

>NTDB_id=198344 CJJRM3420_RS07365 WP_002855848.1 1430005..1431186(-) (ctsF) [Campylobacter jejuni subsp. jejuni str. RM3420]
MKFYEVEFLKNNQNYTKTIKAENLNIAQTKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEHMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=198344 CJJRM3420_RS07365 WP_002855848.1 1430005..1431186(-) (ctsF) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAACAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCATATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.704

99.746

0.975

Multiple sequence alignment