Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | CJJRM3420_RS05240 | Genome accession | NZ_CP017456 |
| Coordinates | 1015923..1016225 (+) | Length | 100 a.a. |
| NCBI ID | WP_002855822.1 | Uniprot ID | A0A1E7NY14 |
| Organism | Campylobacter jejuni subsp. jejuni str. RM3420 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1010923..1021225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJJRM3420_RS05215 (CjjRM3420_1028) | rpsR | 1011285..1011545 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| CJJRM3420_RS05220 (CjjRM3420_1029) | lon | 1011606..1013981 (-) | 2376 | WP_002856101.1 | endopeptidase La | - |
| CJJRM3420_RS05225 (CjjRM3420_1030) | - | 1013998..1014645 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| CJJRM3420_RS05230 (CjjRM3420_1031) | fliW | 1014806..1015195 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| CJJRM3420_RS05235 (CjjRM3420_1032) | proC | 1015195..1015926 (+) | 732 | WP_002855729.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| CJJRM3420_RS05240 (CjjRM3420_1033) | ctsT | 1015923..1016225 (+) | 303 | WP_002855822.1 | transformation system protein | Machinery gene |
| CJJRM3420_RS05245 (CjjRM3420_1034) | - | 1016222..1016884 (+) | 663 | WP_002866103.1 | hypothetical protein | - |
| CJJRM3420_RS05250 (CjjRM3420_1035) | - | 1016881..1017333 (+) | 453 | WP_002869049.1 | hypothetical protein | - |
| CJJRM3420_RS05255 (CjjRM3420_1036) | hemD | 1017330..1017959 (-) | 630 | WP_002856298.1 | uroporphyrinogen-III synthase | - |
| CJJRM3420_RS05260 (CjjRM3420_1037) | thiE | 1017937..1018569 (-) | 633 | WP_002911210.1 | thiamine phosphate synthase | - |
| CJJRM3420_RS05265 (CjjRM3420_1038) | thiD | 1018559..1019371 (-) | 813 | WP_002856188.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| CJJRM3420_RS05270 (CjjRM3420_1039) | - | 1019368..1020054 (-) | 687 | WP_002856040.1 | endonuclease III domain-containing protein | - |
| CJJRM3420_RS05275 (CjjRM3420_1040) | - | 1020051..1020812 (-) | 762 | WP_002856328.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12150.21 Da Isoelectric Point: 6.2957
>NTDB_id=198333 CJJRM3420_RS05240 WP_002855822.1 1015923..1016225(+) (ctsT) [Campylobacter jejuni subsp. jejuni str. RM3420]
MKKAFILIESISAITIISLIFIGIFYYYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=198333 CJJRM3420_RS05240 WP_002855822.1 1015923..1016225(+) (ctsT) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
100 |
100 |
1 |