Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A4C47_RS18565 Genome accession   NZ_CP017446
Coordinates   3512153..3512782 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157:H7 strain 9234     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3507153..3517782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4C47_RS18550 (A4C47_18550) helD 3507395..3509449 (-) 2055 WP_001301436.1 DNA helicase IV -
  A4C47_RS18555 (A4C47_18555) yccF 3509572..3510018 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A4C47_RS18560 (A4C47_18560) yccS 3510028..3512190 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A4C47_RS18565 (A4C47_18565) sxy/tfoX 3512153..3512782 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A4C47_RS18570 (A4C47_18570) sulA 3513001..3513510 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A4C47_RS18580 (A4C47_18580) ompA 3513867..3514907 (+) 1041 WP_000750416.1 porin OmpA -
  A4C47_RS18585 (A4C47_18585) matP 3514983..3515435 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A4C47_RS18590 (A4C47_18590) ycbZ 3515621..3517381 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=198252 A4C47_RS18565 WP_000839159.1 3512153..3512782(-) (sxy/tfoX) [Escherichia coli O157:H7 strain 9234]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=198252 A4C47_RS18565 WP_000839159.1 3512153..3512782(-) (sxy/tfoX) [Escherichia coli O157:H7 strain 9234]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment