Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CD017_RS01600 Genome accession   NZ_CP021905
Coordinates   355060..355905 (+) Length   281 a.a.
NCBI ID   WP_001573568.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Seattle 1945 isolate G477     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 350060..360905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD017_RS01580 - 350326..352167 (-) 1842 WP_000077312.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  CD017_RS01585 metC 352136..353296 (-) 1161 WP_000175858.1 cystathionine beta-lyase MetC -
  CD017_RS01590 - 353293..354396 (-) 1104 WP_000655687.1 PLP-dependent transferase -
  CD017_RS01600 spo0J 355060..355905 (+) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein Regulator
  CD017_RS01605 - 356059..356940 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  CD017_RS01610 - 356970..357173 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  CD017_RS01615 ychF 357185..358282 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  CD017_RS01620 - 358368..358559 (-) 192 WP_001052483.1 hypothetical protein -
  CD017_RS01630 rpsF 358803..359099 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  CD017_RS01635 ssb 359120..359623 (+) 504 WP_000934799.1 single-stranded DNA-binding protein -
  CD017_RS01640 rpsR 359675..359917 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32796.88 Da        Isoelectric Point: 10.1158

>NTDB_id=198215 CD017_RS01600 WP_001573568.1 355060..355905(+) (spo0J) [Staphylococcus aureus strain Seattle 1945 isolate G477]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIKQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=198215 CD017_RS01600 WP_001573568.1 355060..355905(+) (spo0J) [Staphylococcus aureus strain Seattle 1945 isolate G477]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CGCAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCGCAAGATGA
CTTTGTGAGAATCATTAAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381