Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CD007_RS20870 Genome accession   NZ_CP021903
Coordinates   4054990..4055838 (-) Length   282 a.a.
NCBI ID   WP_003226832.1    Uniprot ID   P26497
Organism   Bacillus subtilis strain ge28     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4049990..4060838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS20850 (CD007_20850) yyaE 4050523..4052526 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  CD007_RS20855 (CD007_20855) yyzM 4052577..4052783 (-) 207 WP_003226838.1 DUF951 family protein -
  CD007_RS20860 (CD007_20860) - 4052877..4053893 (-) 1017 WP_077670815.1 hypothetical protein -
  CD007_RS20865 (CD007_20865) yyaC 4054334..4054951 (+) 618 WP_003243890.1 spore protease YyaC -
  CD007_RS20870 (CD007_20870) spo0J 4054990..4055838 (-) 849 WP_003226832.1 stage 0 sporulation protein Spo0J Regulator
  CD007_RS20875 (CD007_20875) soj 4055831..4056592 (-) 762 WP_003219244.1 sporulation initiation inhibitor protein Soj -
  CD007_RS20880 (CD007_20880) yyaB 4056840..4057280 (+) 441 WP_003244005.1 PH domain-containing protein -
  CD007_RS20885 (CD007_20885) noc 4057331..4058182 (-) 852 WP_003226829.1 nucleoid occlusion protein -
  CD007_RS20890 (CD007_20890) rsmG 4058304..4059023 (-) 720 WP_015250777.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32210.16 Da        Isoelectric Point: 8.3881

>NTDB_id=198210 CD007_RS20870 WP_003226832.1 4054990..4055838(-) (spo0J) [Bacillus subtilis strain ge28]
MAKGLGKGINALFNQVDLSEETVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQPLIVRKSLKGYDIVAGERR
FRAAKLAGLDTVPAIVRELSEALMREIALLENLQREDLSPLEEAQAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLLT
LPENIQQLIAEGTLSMGHGRTLLGLKNKNKLEPLVQKVIAEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDAVLKERESY
LQNYFGTTVNIKRQKKKGKIEIEFFSNEDLDRILELLSERES

Nucleotide


Download         Length: 849 bp        

>NTDB_id=198210 CD007_RS20870 WP_003226832.1 4054990..4055838(-) (spo0J) [Bacillus subtilis strain ge28]
ATGGCTAAAGGCCTTGGAAAAGGGATTAATGCGTTATTTAATCAGGTAGATTTGTCTGAAGAGACAGTTGAAGAAATTAA
AATTGCCGATTTACGCCCTAATCCTTATCAGCCAAGAAAACACTTTGATGACGAGGCATTAGCTGAACTAAAAGAATCTG
TGCTGCAGCATGGCATTCTTCAGCCGCTTATCGTCAGAAAATCTTTAAAAGGCTATGATATTGTTGCGGGTGAACGGCGT
TTTCGAGCGGCAAAGCTGGCAGGTTTAGATACAGTTCCGGCCATTGTCCGTGAATTATCAGAGGCGTTAATGAGGGAAAT
TGCTTTATTAGAAAACCTTCAGCGTGAAGATTTATCTCCGCTTGAAGAGGCTCAGGCATATGACTCCTTGTTGAAACACT
TAGATCTCACACAAGAGCAGCTCGCCAAACGTCTTGGGAAAAGCAGACCGCATATTGCGAATCATTTAAGACTGCTGACA
CTGCCAGAAAATATTCAGCAGCTTATTGCCGAAGGTACGCTTTCTATGGGACATGGACGCACGCTCCTTGGCTTGAAAAA
CAAAAATAAGCTTGAACCGCTGGTACAAAAAGTGATTGCGGAGCAGCTCAATGTTCGCCAGCTTGAGCAGCTGATTCAGC
AGTTGAATCAGAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTGAAAGATGCGGTTCTAAAAGAACGGGAATCCTAT
CTCCAAAATTATTTTGGAACAACAGTTAATATTAAAAGACAGAAGAAAAAAGGCAAAATCGAAATTGAATTTTTCTCTAA
TGAAGACCTTGACCGGATTTTAGAGCTTTTGTCTGAACGAGAATCATAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(163-214)

ParB/Sulfiredoxin domain (ParB_N)

(24-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5NOC
  PDB 6SDK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.923

92.199

0.387

Multiple sequence alignment